hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-11214235/chunk_1/iprscan-20090618-11214235.nocrc
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Query sequence: fk02388
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 241.2    8.3e-68   1
SM00490                                                 127.8    1.2e-33   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     334   536 ..     1   219 []   241.2  8.3e-68
SM00490      1/1     574   655 ..     1    86 []   127.8  1.2e-33

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 334 to 536: score 241.2, E = 8.3e-68
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                       +++++p+Q +++p +l+grd+i++a+TGsGKT+af+ p+l +++ +
     fk02388   334    EYtQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 380  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   k+l+  +g+gp +++++PtreL++Q++ e+k++g+ ++      l++v++
     fk02388   381 KELE--PGDGPIAVIVCPTRELCQQIHAECKRFGKAYN------LRSVAV 422  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                   ygG+s+   +eq ++l++g+  i+v+TpgrL+d+++++   +l+++++++
     fk02388   423 YGGgSM---WEQAKALQEGA-EIVVCTPGRLIDHVkKKA-TNLqRVSYLV 467  

                   lDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.eienll
                   +DEa+r+ dm      gf+ q++++ ++++++rq+ll+SAT+ ++ie+l+
     fk02388   468 FDEADRMFDM------GFEYQVRsIASHVRPDRQTLLFSATFRkKIEKLA 511  

                   klflnlpelfpnpvfisvgf...tlepieqf<-*
                   +++l       +p++++ g+ ++++e+++q+   
     fk02388   512 RDILI------DPIRVVQGDigeANEDVTQI    536  

SM00490: domain 1 of 1, from 574 to 655: score 127.8, E = 1.2e-33
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      +ela+ Lk++    g++ + lHG+++q+eR +++ +F+k +i vLva
     fk02388   574    EELANNLKQE----GHNLGLLHGDMDQSERNKVISDFKKKDIPVLVA 616  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   Tdva+rGlDip +++VInyd+ +++++  +RiGR+GRaG   
     fk02388   617 TDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAG    655  

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