# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk02476.fasta.nr -Q fk02476.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk02476, 177 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842218 sequences Expectation_n fit: rho(ln(x))= 5.0672+/-0.000178; mu= 7.1274+/- 0.010 mean_var=63.8434+/-12.822, 0's: 40 Z-trim: 44 B-trim: 2916 in 1/65 Lambda= 0.160515 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088112|dbj|BAD92503.1| polypyrimidine tract b ( 177) 1122 267.9 4.9e-70 gi|16580751|dbj|BAB71743.1| PTB-like protein S [Ho ( 356) 908 218.5 7.2e-55 gi|74761983|sp|Q9UKA9.1|PTBP2_HUMAN Polypyrimidine ( 531) 908 218.6 1e-54 gi|16580749|dbj|BAB71742.1| PTB-like protein L [Ho ( 532) 908 218.6 1e-54 gi|22218306|gb|AAM94625.1| non-neuronal splice var ( 536) 908 218.6 1e-54 gi|22218304|gb|AAM94624.1| non-neuronal splice var ( 537) 908 218.6 1e-54 gi|114557807|ref|XP_001157821.1| PREDICTED: polypy ( 538) 908 218.6 1e-54 gi|109011390|ref|XP_001105102.1| PREDICTED: simila ( 548) 908 218.6 1e-54 gi|114557809|ref|XP_001157727.1| PREDICTED: polypy ( 548) 908 218.6 1e-54 gi|109011386|ref|XP_001105183.1| PREDICTED: simila ( 556) 908 218.6 1e-54 gi|114557813|ref|XP_001158032.1| PREDICTED: polypy ( 557) 908 218.6 1e-54 gi|109011393|ref|XP_001105250.1| PREDICTED: simila ( 557) 908 218.6 1e-54 gi|114557811|ref|XP_001157775.1| PREDICTED: polypy ( 558) 908 218.6 1e-54 gi|74193172|dbj|BAE20599.1| unnamed protein produc ( 241) 903 217.2 1.2e-54 gi|149025820|gb|EDL82063.1| polypyrimidine tract b ( 243) 903 217.2 1.2e-54 gi|158455056|gb|AAI22581.1| PTBP2 protein [Bos tau ( 255) 901 216.8 1.7e-54 gi|81910658|sp|Q66H20|PTBP2_RAT Polypyrimidine tra ( 531) 903 217.5 2.2e-54 gi|25392158|pir||JC7526 polypyrimidine tract-bindi ( 532) 903 217.5 2.2e-54 gi|8358154|gb|AAF21807.2|AF095718_1 RRM-type RNA-b ( 532) 903 217.5 2.2e-54 gi|90075792|dbj|BAE87576.1| unnamed protein produc ( 226) 898 216.1 2.5e-54 gi|16307418|gb|AAH10255.1| Polypyrimidine tract bi ( 531) 892 214.9 1.3e-53 gi|194211088|ref|XP_001490156.2| PREDICTED: simila ( 528) 890 214.4 1.8e-53 gi|118094291|ref|XP_422322.2| PREDICTED: similar t ( 531) 884 213.1 4.7e-53 gi|148680404|gb|EDL12351.1| polypyrimidine tract b ( 528) 880 212.1 8.9e-53 gi|148680405|gb|EDL12352.1| polypyrimidine tract b ( 529) 880 212.1 8.9e-53 gi|194389592|dbj|BAG61757.1| unnamed protein produ ( 540) 874 210.7 2.4e-52 gi|194389558|dbj|BAG61740.1| unnamed protein produ ( 548) 830 200.6 2.8e-49 gi|126311390|ref|XP_001381834.1| PREDICTED: simila ( 589) 830 200.6 3e-49 gi|112418598|gb|AAI21904.1| Polypyrimidine tract b ( 531) 827 199.9 4.4e-49 gi|149410641|ref|XP_001508115.1| PREDICTED: simila ( 653) 824 199.2 8.5e-49 gi|194379976|dbj|BAG58340.1| unnamed protein produ ( 325) 719 174.7 1e-41 gi|148725196|emb|CAN88519.1| novel protein similar ( 538) 709 172.5 7.5e-41 gi|109011396|ref|XP_001105013.1| PREDICTED: simila ( 498) 702 170.9 2.2e-40 gi|73959501|ref|XP_547270.2| PREDICTED: similar to ( 503) 702 170.9 2.2e-40 gi|148670262|gb|EDL02209.1| ROD1 regulator of diff ( 590) 671 163.8 3.6e-38 gi|73987391|ref|XP_868629.1| PREDICTED: similar to ( 355) 665 162.2 6.3e-38 gi|73987401|ref|XP_868641.1| PREDICTED: similar to ( 531) 665 162.3 8.7e-38 gi|73987393|ref|XP_868632.1| PREDICTED: similar to ( 537) 665 162.3 8.8e-38 gi|73987395|ref|XP_868634.1| PREDICTED: similar to ( 539) 665 162.3 8.8e-38 gi|73987397|ref|XP_868637.1| PREDICTED: similar to ( 550) 665 162.3 9e-38 gi|73987389|ref|XP_542215.2| PREDICTED: similar to ( 557) 665 162.3 9.1e-38 gi|73987399|ref|XP_868639.1| PREDICTED: similar to ( 563) 665 162.4 9.1e-38 gi|158454983|gb|AAI03384.1| PTBP1 protein [Bos tau ( 446) 663 161.8 1e-37 gi|75073578|sp|Q8WN55|PTBP1_BOVIN Polypyrimidine t ( 531) 663 161.9 1.2e-37 gi|2500586|sp|Q29099|PTBP1_PIG Polypyrimidine trac ( 557) 662 161.7 1.5e-37 gi|148699702|gb|EDL31649.1| mCG13402, isoform CRA_ ( 257) 656 160.1 2e-37 gi|148670261|gb|EDL02208.1| ROD1 regulator of diff ( 528) 659 160.9 2.3e-37 gi|149037107|gb|EDL91638.1| ROD1 regulator of diff ( 528) 657 160.5 3.1e-37 gi|148699701|gb|EDL31648.1| mCG13402, isoform CRA_ ( 454) 656 160.2 3.3e-37 gi|62087400|dbj|BAD92147.1| polypyrimidine tract-b ( 329) 654 159.7 3.5e-37 >>gi|62088112|dbj|BAD92503.1| polypyrimidine tract bindi (177 aa) initn: 1122 init1: 1122 opt: 1122 Z-score: 1412.5 bits: 267.9 E(): 4.9e-70 Smith-Waterman score: 1122; 100.000% identity (100.000% similar) in 177 aa overlap (1-177:1-177) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 40 50 60 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 70 80 90 100 110 120 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA 130 140 150 160 170 >>gi|16580751|dbj|BAB71743.1| PTB-like protein S [Homo s (356 aa) initn: 908 init1: 908 opt: 908 Z-score: 1140.2 bits: 218.5 E(): 7.2e-55 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|165 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|165 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|165 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQT 100 110 120 130 140 150 gi|165 ANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ 160 170 180 190 200 210 >>gi|74761983|sp|Q9UKA9.1|PTBP2_HUMAN Polypyrimidine tra (531 aa) initn: 908 init1: 908 opt: 908 Z-score: 1137.7 bits: 218.6 E(): 1e-54 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|747 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|747 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQT 100 110 120 130 140 150 gi|747 ANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ 160 170 180 190 200 210 >>gi|16580749|dbj|BAB71742.1| PTB-like protein L [Homo s (532 aa) initn: 908 init1: 908 opt: 908 Z-score: 1137.7 bits: 218.6 E(): 1e-54 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|165 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|165 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|165 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQT 100 110 120 130 140 150 gi|165 ANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ 160 170 180 190 200 210 >>gi|22218306|gb|AAM94625.1| non-neuronal splice variant (536 aa) initn: 908 init1: 908 opt: 908 Z-score: 1137.6 bits: 218.6 E(): 1e-54 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|222 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|222 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|222 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQT 100 110 120 130 140 150 gi|222 ANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ 160 170 180 190 200 210 >>gi|22218304|gb|AAM94624.1| non-neuronal splice variant (537 aa) initn: 908 init1: 908 opt: 908 Z-score: 1137.6 bits: 218.6 E(): 1e-54 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|222 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|222 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|222 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQT 100 110 120 130 140 150 gi|222 ANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ 160 170 180 190 200 210 >>gi|114557807|ref|XP_001157821.1| PREDICTED: polypyrimi (538 aa) initn: 908 init1: 908 opt: 908 Z-score: 1137.6 bits: 218.6 E(): 1e-54 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|114 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|114 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQARAQAVLQAVTAVQ 100 110 120 130 140 150 gi|114 TANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNN 160 170 180 190 200 210 >>gi|109011390|ref|XP_001105102.1| PREDICTED: similar to (548 aa) initn: 908 init1: 908 opt: 908 Z-score: 1137.5 bits: 218.6 E(): 1e-54 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|109 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|109 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQT 100 110 120 130 140 150 gi|109 ANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ 160 170 180 190 200 210 >>gi|114557809|ref|XP_001157727.1| PREDICTED: polypyrimi (548 aa) initn: 908 init1: 908 opt: 908 Z-score: 1137.5 bits: 218.6 E(): 1e-54 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|114 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|114 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQARAQAVLQAVTAVQ 100 110 120 130 140 150 gi|114 TANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNN 160 170 180 190 200 210 >>gi|109011386|ref|XP_001105183.1| PREDICTED: similar to (556 aa) initn: 908 init1: 908 opt: 908 Z-score: 1137.4 bits: 218.6 E(): 1e-54 Smith-Waterman score: 908; 100.000% identity (100.000% similar) in 144 aa overlap (23-166:1-144) 10 20 30 40 50 60 fk0247 AACVARWLRGSVLVSEALSGSAMDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT :::::::::::::::::::::::::::::::::::::: gi|109 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVT 10 20 30 70 80 90 100 110 120 fk0247 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAF 40 50 60 70 80 90 130 140 150 160 170 fk0247 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQVSMCRYINKMA :::::::::::::::::::::::::::::::::::::::::::::: gi|109 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQT 100 110 120 130 140 150 gi|109 ANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ 160 170 180 190 200 210 177 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 00:08:44 2008 done: Mon Aug 11 00:11:39 2008 Total Scan time: 608.030 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]