hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-00172667/chunk_1/iprscan-20080811-00172667.nocrc
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Query sequence: fk02489
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02854.9.ls MIF4G domain                                   228.7    1.2e-65   1
PF02854.9.fs MIF4G domain                                   226.7    4.6e-65   1
PF02020.8.fs eIF4-gamma/eIF5/eIF2-epsilon                   122.4    1.5e-36   1
PF02020.8.ls eIF4-gamma/eIF5/eIF2-epsilon                   124.3    3.2e-34   1
PF02847.7.fs MA3 domain                                      77.4      9e-23   1
PF02847.7.ls MA3 domain                                      79.4    1.1e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02854.9.ls   1/1     111   341 ..     1   230 []   228.7  1.2e-65
PF02854.9.fs   1/1     111   341 ..     1   230 []   226.7  4.6e-65
PF02847.7.fs   1/1     577   690 ..     1   116 []    77.4    9e-23
PF02847.7.ls   1/1     577   690 ..     1   116 []    79.4  1.1e-20
PF02020.8.fs   1/1     857   938 ..     1    87 []   122.4  1.5e-36
PF02020.8.ls   1/1     857   938 ..     1    87 []   124.3  3.2e-34

Alignments of top-scoring domains:
PF02854.9.ls: domain 1 of 1, from 111 to 341: score 228.7, E = 1.2e-65
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                      ++kv+g+lnkL+  pe+f++++ ell++ +++        k +lk +
     fk02489   111    FRKVRGILNKLT--PEKFDkLCLELLNVGVES--------KLILKGV 147  

                   lelifekaveepnfipayArLcalLnsknp.............gekteFg
                   + li++ka eep+ +++yA+Lc +L+   p+ +++  +++++++++t+F+
     fk02489   148 ILLIVDKALEEPKYSSLYAQLCLRLAEDAPnfdgpaaegqpgqKQSTTFR 197  

                   slllnrlqeeFekr............eleaeleeeersdrkrrlglvrFl
                   +ll+ +lq eFe+r+++ +  +++++ l  e+ee++++++ ++lg+++F+
     fk02489   198 RLLISKLQDEFENRtrnvdvydkrenPLLPEEEEQRAIAKIKMLGNIKFI 247  

                   gELynfqvltekiileilkelledlteedlqdqvrdeeslecllllLeti
                   gEL ++ +++e+i+++++k+lle+ ++ +l   +++ e+lecl+++++t+
     fk02489   248 GELGKLDLIHESILHKCIKTLLEKKKRVQL---KDMGEDLECLCQIMRTV 294  

                   GklLdnsekskklmdeilerlqkillkrdkshvrvesepelssrirfmle
                   G++Ld +e +k+lmd++++r+++++l+           +el+ rirf+l+
     fk02489   295 GPRLD-HERAKSLMDQYFARMCSLMLS-----------KELPARIRFLLQ 332  

                   dlielrknk<-*
                   d++elr+ +   
     fk02489   333 DTVELREHH    341  

PF02854.9.fs: domain 1 of 1, from 111 to 341: score 226.7, E = 4.6e-65
                   *->lkkvngllnkLsespenfe.iikellklnmsdlreeDennkellksl
                      ++kv+g+lnkL+  pe+f++++ ell++ +++        k +lk +
     fk02489   111    FRKVRGILNKLT--PEKFDkLCLELLNVGVES--------KLILKGV 147  

                   lelifekaveepnfipayArLcalLnsknp.............gekteFg
                   + li++ka eep+ +++yA+Lc +L+   p+ +++  +++++++++t+F+
     fk02489   148 ILLIVDKALEEPKYSSLYAQLCLRLAEDAPnfdgpaaegqpgqKQSTTFR 197  

                   slllnrlqeeFekr............eleaeleeeersdrkrrlglvrFl
                   +ll+ +lq eFe+r+++ +  +++++ l  e+ee++++++ ++lg+++F+
     fk02489   198 RLLISKLQDEFENRtrnvdvydkrenPLLPEEEEQRAIAKIKMLGNIKFI 247  

                   gELynfqvltekiileilkelledlteedlqdqvrdeeslecllllLeti
                   gEL ++ +++e+i+++++k+lle+ ++ +l   +++ e+lecl+++++t+
     fk02489   248 GELGKLDLIHESILHKCIKTLLEKKKRVQL---KDMGEDLECLCQIMRTV 294  

                   GklLdnsekskklmdeilerlqkillkrdkshvrvesepelssrirfmle
                   G++Ld +e +k+lmd++++r+++++l+           +el+ rirf+l+
     fk02489   295 GPRLD-HERAKSLMDQYFARMCSLMLS-----------KELPARIRFLLQ 332  

                   dlielrknk<-*
                   d++elr+ +   
     fk02489   333 DTVELREHH    341  

PF02847.7.fs: domain 1 of 1, from 577 to 690: score 77.4, E = 9e-23
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      l k ++  + EYl+sG   EA+  ++e+  p +f +e   ++i l l
     fk02489   577    LLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL 623  

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   ++  ++  +e +s L+s l q++  +++ f ++F  +l++++ l++DiP 
     fk02489   624 DR--SDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPL 671  

                   alrnLaeFvarlisdgiLp<-*
                     ++La+F ar+i+++ ++   
     fk02489   672 VKSYLAQFAARAIISELVS    690  

PF02847.7.ls: domain 1 of 1, from 577 to 690: score 79.4, E = 1.1e-20
                   *->lkkkiflileEYlssGDtdEAarclleLglpeefhhevVkelivlal
                      l k ++  + EYl+sG   EA+  ++e+  p +f +e   ++i l l
     fk02489   577    LLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL 623  

                   eeSvkktyremyskLLsrlcqknvistkqfekGFsrllesleDlalDiPd
                   ++  ++  +e +s L+s l q++  +++ f ++F  +l++++ l++DiP 
     fk02489   624 DR--SDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPL 671  

                   alrnLaeFvarlisdgiLp<-*
                     ++La+F ar+i+++ ++   
     fk02489   672 VKSYLAQFAARAIISELVS    690  

PF02020.8.fs: domain 1 of 1, from 857 to 938: score 122.4, E = 1.5e-36
                   *->eeeqidlLlalEefcveleeelvikllakilvslYDaDileEeaIlk
                       + q+ +L+al+ +c+++ +++ +++l++++v++YD++i+eEea+l+
     fk02489   857    VDLQVSALYALQVHCYNS-NFP-KGMLLRFFVHFYDMEIIEEEAFLA 901  

                   WyekadsadeskEgkkkvrkqakkFvtWLkeAeEEEseed<-*
                   W+e  d+++e++ gk+k+++q+++++tWL++AeEEEsee+   
     fk02489   902 WKE--DITQEFP-GKGKALFQVNQWLTWLETAEEEESEEE    938  

PF02020.8.ls: domain 1 of 1, from 857 to 938: score 124.3, E = 3.2e-34
                   *->eeeqidlLlalEefcveleeelvikllakilvslYDaDileEeaIlk
                       + q+ +L+al+ +c+++ +++ +++l++++v++YD++i+eEea+l+
     fk02489   857    VDLQVSALYALQVHCYNS-NFP-KGMLLRFFVHFYDMEIIEEEAFLA 901  

                   WyekadsadeskEgkkkvrkqakkFvtWLkeAeEEEseed<-*
                   W+e  d+++e++ gk+k+++q+++++tWL++AeEEEsee+   
     fk02489   902 WKE--DITQEFP-GKGKALFQVNQWLTWLETAEEEESEEE    938  

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