hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-00172667/chunk_1/iprscan-20080811-00172667.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk02489
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00543                                                 209.7    2.5e-58   1
SM00544                                                 141.2    1.1e-37   1
SM00515                                                 129.3    4.1e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00543    1/1     111   341 ..     1   227 []   209.7  2.5e-58
SM00544    1/1     577   690 ..     1   117 []   141.2  1.1e-37
SM00515    1/1     847   933 ..     1    92 []   129.3  4.1e-34

Alignments of top-scoring domains:
SM00543: domain 1 of 1, from 111 to 341: score 209.7, E = 2.5e-58
                   *->ekkvnglinkLspdnfeslikellklnndlleeeDPnendkellkel
                       +kv+g++nkL+p++f++l+ ell++  ++          k +lk +
     fk02489   111    FRKVRGILNKLTPEKFDKLCLELLNVGVES----------KLILKGV 147  

                   ielifekaveepglqDklnfipayArLcalLnaknp..............
                   i li++ka eep      + +++yA+Lc +L+ + p+ +++  +++++++
     fk02489   148 ILLIVDKALEEP------KYSSLYAQLCLRLAEDAPnfdgpaaegqpgqk 191  

                   ...dFgsllldrlqeeFekrkdd.eekeklepkQvicdaeee.ele.ele
                   ++++F++ll+ +lq eFe+r+++ ++++k           +e++l +e+e
     fk02489   192 qstTFRRLLISKLQDEFENRTRNvDVYDK-----------REnPLLpEEE 230  

                   eeeeknrkrrlglvrFlgELynfqvltskiilellkelledlte......
                   e++ +++ ++lg+++F+gEL ++++++++i++ ++k+lle+ ++ + ++ 
     fk02489   231 EQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRvqlkdm 280  

                   .fslecllslLetcGkdLe.ekspklldellerlqdill...lsprlrfm
                   +++lecl+++++t+G++L++e +++l+d++++r+++++l+++l++r+rf+
     fk02489   281 gEDLECLCQIMRTVGPRLDhERAKSLMDQYFARMCSLMLskeLPARIRFL 330  

                   ledlielrknk<-*
                   l+d +elr+ +   
     fk02489   331 LQDTVELREHH    341  

SM00544: domain 1 of 1, from 577 to 690: score 141.2, E = 1.1e-37
                   *->lkkkifliikEylssgDtdEAvhclleLklpeefhhevvkvlltlaL
                      l k++++++ Eyl+sg  +EAv++++e+ +p++f++e+++++++l+L
     fk02489   577    LLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL 623  

                   eeatvkrtyremysvLLsrlcqanvistkqfekgFwrllesleDlelDiP
                   ++   ++  +e++s+L+s l q++ +++++f+++F+++l+++++le+DiP
     fk02489   624 DR---SDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIP 670  

                   dalrnLaeFlarlisdgiLp<-*
                   +++++La+F+ar+i+++ ++   
     fk02489   671 LVKSYLAQFAARAIISELVS    690  

SM00515: domain 1 of 1, from 847 to 933: score 129.3, E = 4.1e-34
                   *->gpllkfllkdeeeqlelLyaiEefcvelekellkllpkilksLYDeD
                      ++++kfl+++ + q+ +Lya++ +c+++++ ++++l+++++++YD++
     fk02489   847    PVMQKFLHDHVDLQVSALYALQVHCYNSNF-PKGMLLRFFVHFYDME 892  

                   vleEeaIlkWyekkSKkyvsaeekskvrknakpqFvtWLqeAEEE<-*
                   ++eEea+l+W+e+   +++++++k+k+++++++ ++tWL++AEEE   
     fk02489   893 IIEEEAFLAWKED---ITQEFPGKGKALFQVNQ-WLTWLETAEEE    933  

//