hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-00224691/chunk_1/iprscan-20080811-00224691.nocrc
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Query sequence: fk02491
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00514.13.ls Armadillo/beta-catenin-like repeat             218.2    1.7e-62  11
PF00514.13.fs Armadillo/beta-catenin-like repeat             213.6    4.1e-61  12
PF02985.12.fs HEAT repeat                                     39.7    3.8e-10   4
PF02985.12.ls HEAT repeat                                     42.7    1.2e-09   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02985.12.ls   1/4     173   209 ..     1    36 []    20.5   0.0057
PF00514.13.ls   3/11    251   291 ..     1    41 []    37.3  4.9e-08
PF00514.13.fs   3/12    251   291 ..     1    41 []    35.3  5.9e-09
PF00514.13.fs   5/12    377   417 ..     1    41 []    46.4  4.3e-12
PF00514.13.ls   6/11    377   417 ..     1    41 []    48.4  2.2e-11
PF00514.13.ls   7/11    418   456 ..     1    41 []    22.1   0.0019
PF00514.13.fs   7/12    458   500 ..     1    41 []    24.9  4.9e-06
PF00514.13.ls   8/11    458   500 ..     1    41 []    26.9  6.7e-05
PF00514.13.fs  11/12    609   649 ..     1    41 []    38.8  5.9e-10
PF00514.13.ls  10/11    609   649 ..     1    41 []    40.9  4.2e-09
PF00514.13.ls  11/11    650   690 ..     1    41 []    22.9   0.0011

Alignments of top-scoring domains:
PF02985.12.ls: domain 1 of 4, from 173 to 209: score 20.5, E = 0.0057
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++ ++ lp l kllnD+dp V   Aa  + +l+++    
     fk02491   173    AeLATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKE    209  

PF00514.13.ls: domain 3 of 11, from 251 to 291: score 37.3, E = 4.9e-08
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      + e   a+ ++G++p+Lv++Lssp e+v+++A ++L+NL     
     fk02491   251    HREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLL    291  

PF00514.13.fs: domain 3 of 12, from 251 to 291: score 35.3, E = 5.9e-09
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      + e   a+ ++G++p+Lv++Lssp e+v+++A ++L+NL     
     fk02491   251    HREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLL    291  

PF00514.13.fs: domain 5 of 12, from 377 to 417: score 46.4, E = 4.3e-12
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +p nk a+veaG++++L + L+s++++++++++w+L+NL++   
     fk02491   377    CPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSD    417  

PF00514.13.ls: domain 6 of 11, from 377 to 417: score 48.4, E = 2.2e-11
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +p nk a+veaG++++L + L+s++++++++++w+L+NL++   
     fk02491   377    CPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSD    417  

PF00514.13.ls: domain 7 of 11, from 418 to 456: score 22.1, E = 0.0019
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                        + kq+  e+ +l++Lv+ Ls +d++v++ A+++LsNL+    
     fk02491   418    -VATKQEGLES-VLKILVNQLSVDDVNVLTCATGTLSNLTC    456  

PF00514.13.fs: domain 7 of 12, from 458 to 500: score 24.9, E = 4.9e-06
                   *->npenkqavveaGalppLvqLLs..spdeevqeeAawALsNLaa<-*
                      n++nk +v +  ++++L++ + +  ++ ++ e+A++AL++L++   
     fk02491   458    NSKNKTLVTQNSGVEALIHAILraGDKDDITEPAVCALRHLTS    500  

PF00514.13.ls: domain 8 of 11, from 458 to 500: score 26.9, E = 6.7e-05
                   *->npenkqavveaGalppLvqLLs..spdeevqeeAawALsNLaa<-*
                      n++nk +v +  ++++L++ + +  ++ ++ e+A++AL++L++   
     fk02491   458    NSKNKTLVTQNSGVEALIHAILraGDKDDITEPAVCALRHLTS    500  

PF00514.13.fs: domain 11 of 12, from 609 to 649: score 38.8, E = 5.9e-10
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +p n++++ +++ +p++vqLL+s+ e++q++Aa++L+ La    
     fk02491   609    DPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQ    649  

PF00514.13.ls: domain 10 of 11, from 609 to 649: score 40.9, E = 4.2e-09
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +p n++++ +++ +p++vqLL+s+ e++q++Aa++L+ La    
     fk02491   609    DPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQ    649  

PF00514.13.ls: domain 11 of 11, from 650 to 690: score 22.9, E = 0.0011
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      + e  +a+  +Ga  pL++LL+s++e++ ++Aa++L  ++    
     fk02491   650    DKEAADAIDAEGASAPLMELLHSRNEGTATYAAAVLFRISE    690  

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