hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-00224691/chunk_1/iprscan-20080811-00224691.nocrc
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Query sequence: fk02491
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00185                                                 256.4    2.3e-72  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00185    1/12    168   207 ..     1    38 []     8.0       47
SM00185    2/12    208   250 ..     1    38 []     7.6       54
SM00185    3/12    251   291 ..     1    38 []    31.2  0.00014
SM00185    4/12    292   333 ..     1    38 []    20.6     0.23
SM00185    5/12    335   376 ..     1    38 []    16.8        3
SM00185    6/12    377   417 ..     1    38 []    44.7  1.3e-08
SM00185    7/12    418   456 ..     1    38 []     9.5       31
SM00185    8/12    458   500 ..     1    38 []    25.1   0.0097
SM00185    9/12    505   546 ..     1    38 []    21.6     0.11
SM00185   10/12    547   608 ..     1    38 []    28.4  0.00099
SM00185   11/12    609   649 ..     1    38 []    32.2  7.1e-05
SM00185   12/12    650   690 ..     1    38 []    10.8       21

Alignments of top-scoring domains:
SM00185: domain 1 of 12, from 168 to 207: score 8.0, E = 47
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      n +  +++    +lp L +LL+++d+ v+  Aa+ + +l++   
     fk02491   168    NYQDDAELATR-ALPELTKLLndeDPVVVTKAAMIVNQLSK    207  

SM00185: domain 2 of 12, from 208 to 250: score 7.6, E = 54
                   *->nde.nkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      ++ + ++ +   + + a v+ +++++d +  +++++ L+Nl++   
     fk02491   208    KEAsRRALMGSPQLVAAVVRTMqntsDLDTARCTTSILHNLSH    250  

SM00185: domain 3 of 12, from 251 to 291: score 31.2, E = 0.00014
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      + e   a+ ++Gg+paLv++L+++ e+v+++A+ +L+Nl     
     fk02491   251    HREGLLAIFKSGGIPALVRMLsspVESVLFYAITTLHNLLL    291  

SM00185: domain 4 of 12, from 292 to 333: score 20.6, E = 0.23
                   *->nde.nkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                       +e++k+av+ a gl++ v LL++++++ +  ++++L  la+   
     fk02491   292    YQEgAKMAVRLADGLQKMVPLLnknNPKFLAITTDCLQLLAY    333  

SM00185: domain 5 of 12, from 335 to 376: score 16.8, E = 3
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      n+e k ++   Gg +aLvq +++ + e++++++ ++L  l+    
     fk02491   335    NQESKLIILANGGPQALVQIMrnysYEKLLWTTSRVLKVLSV    376  

SM00185: domain 6 of 12, from 377 to 417: score 44.7, E = 1.3e-08
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      ++ nk a+v+aGg++aL + L++++++++++++w+L+Nl++   
     fk02491   377    CPSNKPAIVEAGGMQALGKHLtsnSPRLVQNCLWTLRNLSD    417  

SM00185: domain 7 of 12, from 418 to 456: score 9.5, E = 31
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                          kq+  ++ +l++Lv+ L+ +d++v+ +A+++LsNl+    
     fk02491   418    -VATKQEGLES-VLKILVNQLsvdDVNVLTCATGTLSNLTC    456  

SM00185: domain 8 of 12, from 458 to 500: score 25.1, E = 0.0097
                   *->ndenkqavvdaGglpaLvqLL.....deevqkeAawaLsNlas<-*
                      n++nk  v +  g++aL++ + + ++++++ + A++aL+ l+s   
     fk02491   458    NSKNKTLVTQNSGVEALIHAIlragdKDDITEPAVCALRHLTS    500  

SM00185: domain 9 of 12, from 505 to 546: score 21.6, E = 0.11
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                       + +   v+   g+pa+v+LL++++   ++k+++++++Nla    
     fk02491   505    AEMAQNSVRLNYGIPAIVKLLnqpnQWPLVKATIGLIRNLAL    546  

SM00185: domain 10 of 12, from 547 to 608: score 28.4, E = 0.00099
                   *->ndenkqavvdaGglpaLvqLL........................de
                      ++ n++ + +a ++p+LvqLL + +++ +++   +++++ +++ + e
     fk02491   547    CPANHAPLQEAAVIPRLVQLLvkahqdaqrhvaagtqqpytdgvrME 593  

                   evqkeAawaLsNlas<-*
                   e+++ +++aL+ la+   
     fk02491   594 EIVEGCTGALHILAR    608  

SM00185: domain 11 of 12, from 609 to 649: score 32.2, E = 7.1e-05
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      ++ n++++ +++ +p++vqLL ++ e++q++Aa++L  la+   
     fk02491   609    DPMNRMEIFRLNTIPLFVQLLyssVENIQRVAAGVLCELAQ    649  

SM00185: domain 12 of 12, from 650 to 690: score 10.8, E = 21
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      + e++ a+  +G+  +L++LL++++e    +Aa +L  +++   
     fk02491   650    DKEAADAIDAEGASAPLMELLhsrNEGTATYAAAVLFRISE    690  

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