hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-00282408/chunk_1/iprscan-20080811-00282408.nocrc
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Query sequence: fk02504
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                 126.5    2.9e-33   9
SM00408                                                  50.8    1.8e-10   1
SM00409                                                  47.2    2.2e-09   1
SM00013                                                  27.3     0.0021   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00013     1/1      79   113 ..     1    38 []    27.3   0.0021
SM00369     1/9     132   155 ..     1    24 []    14.4      7.3
SM00369     2/9     156   179 ..     1    24 []    22.3    0.067
SM00369     3/9     180   203 ..     1    24 []    18.8     0.75
SM00369     4/9     204   227 ..     1    24 []    16.6      3.4
SM00369     5/9     228   251 ..     1    24 []    17.6      1.8
SM00369     6/9     252   275 ..     1    24 []     2.4  2.1e+02
SM00369     7/9     324   347 ..     1    24 []     9.6       28
SM00369     8/9     348   371 ..     1    24 []     4.8  1.1e+02
SM00369     9/9     372   395 ..     1    24 []    19.9     0.35
SM00409     1/1     469   553 ..     1    58 []    47.2  2.2e-09
SM00408     1/1     475   542 ..     1    56 []    50.8  1.8e-10

Alignments of top-scoring domains:
SM00013: domain 1 of 1, from 79 to 113: score 27.3, E = 0.0021
                   *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-*
                      +CP+ C Cs + ++aV C+++     +vP ++P +t+l   
     fk02504    79    GCPPRCECS-AQDRAVLCHRKRFV--AVPEGIPTETRL    113  

SM00369: domain 1 of 9, from 132 to 155: score 14.4, E = 7.3
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       p+L+eL L+ N  +++ pgaF++   
     fk02504   132    FPHLEELELNENIVSAVEPGAFNN    155  

SM00369: domain 2 of 9, from 156 to 179: score 22.3, E = 0.067
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L nLr+L L +N+L+ +P g+F g   
     fk02504   156    LFNLRTLGLRSNRLKLIPLGVFTG    179  

SM00369: domain 3 of 9, from 180 to 203: score 18.8, E = 0.75
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nL++Ld s N++  L + +Fq+   
     fk02504   180    LSNLTKLDISENKIVILLDYMFQD    203  

SM00369: domain 4 of 9, from 204 to 227: score 16.6, E = 3.4
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L nL++L  ++N L  + ++aF+g   
     fk02504   204    LYNLKSLEVGDNDLVYISHRAFSG    227  

SM00369: domain 5 of 9, from 228 to 251: score 17.6, E = 1.8
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L+ L L+  +Lts+P +a+++   
     fk02504   228    LNSLEQLTLEKCNLTSIPTEALSH    251  

SM00369: domain 6 of 9, from 252 to 275: score 2.4, E = 2.1e+02
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ L +L+L + ++ ++ +  F     
     fk02504   252    LHGLIVLRLRHLNINAIRDYSFKR    275  

SM00369: domain 7 of 9, from 324 to 347: score 9.6, E = 28
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ Lr L+Ls+N ++++   +++    
     fk02504   324    LVYLRFLNLSYNPISTIEGSMLHE    347  

SM00369: domain 8 of 9, from 348 to 371: score 4.8, E = 1.1e+02
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L  L+e  L + qL  + p aF+g   
     fk02504   348    LLRLQEIQLVGGQLAVVEPYAFRG    371  

SM00369: domain 9 of 9, from 372 to 395: score 19.9, E = 0.35
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L  Lr+L+ s+NqLt+L + +F++   
     fk02504   372    LNYLRVLNVSGNQLTTLEESVFHS    395  

SM00409: domain 1 of 1, from 469 to 553: score 47.2, E = 2.2e-09
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       ++v v eG +v++ C+a +++++ i W++++++  + +++++ +  
     fk02504   469    AQqVFVDEGHTVQFVCrADgdpppAILWLsprkhlvsaksngrltvf 515  

                   ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++++L+++ ++++D    GtY C a + +g++s+  +++L+V+   
     fk02504   516 pdgtLEVrYAQVQDN---GTYLCIAAnaGGNDSM--PAHLHVR    553  

SM00408: domain 1 of 1, from 475 to 542: score 50.8, E = 1.8e-10
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt
                       eG +V++ C+a+gdp p I Wl + k+l + +++++ +   ++tL+
     fk02504   475    DEGHTVQFVCRADGDPPPAILWLSpRKHLVsaksngrltvfPDGTLE 521  

                   iknvsleDsGlYtCvArNsvg<-*
                   ++ +++ D G+Y C+A N+ g   
     fk02504   522 VRYAQVQDNGTYLCIAANAGG    542  

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