hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-11275888/chunk_1/iprscan-20090618-11275888.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk03085 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00439.15.ls Bromodomain 121.5 2.3e-33 1 PF00439.15.fs Bromodomain 119.5 3.9e-33 1 PF00643.14.ls B-box zinc finger 117.6 3.3e-32 2 PF00643.14.fs B-box zinc finger 113.8 4.6e-31 2 PF00628.19.fs PHD-finger 59.9 8e-19 3 PF00628.19.ls PHD-finger 56.8 6.4e-14 1 PF00097.15.fs Zinc finger, C3HC4 type (RING finger) 17.6 7.5e-06 1 PF00097.15.ls Zinc finger, C3HC4 type (RING finger) 18.2 0.0019 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00097.15.fs 1/1 100 126 .. 1 35 [. 17.6 7.5e-06 PF00097.15.ls 1/1 100 174 .. 1 50 [] 18.2 0.0019 PF00643.14.fs 1/2 202 249 .. 1 50 [] 54.5 2.6e-13 PF00643.14.ls 1/2 202 249 .. 1 50 [] 56.5 8.4e-14 PF00643.14.ls 2/2 262 303 .. 1 50 [] 61.1 3.3e-15 PF00643.14.fs 2/2 262 303 .. 1 50 [] 59.3 1.2e-14 PF00628.19.ls 1/1 872 917 .. 1 51 [] 56.8 6.4e-14 PF00628.19.fs 3/3 872 917 .. 1 51 [] 55.0 3.1e-17 PF00439.15.fs 1/1 945 1036 .. 1 92 [] 119.5 3.9e-33 PF00439.15.ls 1/1 945 1036 .. 1 92 [] 121.5 2.3e-33 Alignments of top-scoring domains: PF00097.15.fs: domain 1 of 1, from 100 to 126: score 17.6, E = 7.5e-06 *->CrICleelkepsndfplilpCgHsGslkyfCrsCl<-* C++C+++ ++ +p +lpC+Hs fC+ Cl fk03085 100 CAVCHQN-IQSR--APKLLPCLHS-----FCQRCL 126 PF00097.15.ls: domain 1 of 1, from 100 to 174: score 18.2, E = 0.0019 *->CrICleelkepsndfplilpCgHsGslkyfCrsCl...erwlss... C++C+++ ++ +p +lpC+Hs fC+ Cl+ ++r+l + + fk03085 100 CAVCHQN-IQSR--APKLLPCLHS-----FCQRCLpapQRYLMLpap 138 ...........................sgnttCplC<-* ++ +++++ + ++++ +++++ ++ g Cp+C fk03085 139 mlgsaetpppvpapgspvsgsspfatqVGVIRCPVC 174 PF00643.14.fs: domain 1 of 2, from 202 to 249: score 54.5, E = 2.6e-13 *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv + ++vC++++dn++++ FC+++ ++LC +C ++ Hq++k++++Htv fk03085 202 KSNQVCTSCEDNAEANGFCVECVEWLCKTCIRA--HQRVKFTKDHTV 246 vpl<-* + fk03085 247 RQK 249 PF00643.14.ls: domain 1 of 2, from 202 to 249: score 56.5, E = 8.4e-14 *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv + ++vC++++dn++++ FC+++ ++LC +C ++ Hq++k++++Htv fk03085 202 KSNQVCTSCEDNAEANGFCVECVEWLCKTCIRA--HQRVKFTKDHTV 246 vpl<-* + fk03085 247 RQK 249 PF00643.14.ls: domain 2 of 2, from 262 to 303: score 61.1, E = 3.3e-15 *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv +++++Cp H+ +e+l+l+Ce++++l+C++C+l eH + H++ fk03085 262 QRPVFCPFHK-KEQLKLYCETCDKLTCRDCQLL-EH------KEHRY 300 vpl<-* +++ fk03085 301 QFI 303 PF00643.14.fs: domain 2 of 2, from 262 to 303: score 59.3, E = 1.2e-14 *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv +++++Cp H+ +e+l+l+Ce++++l+C++C+l eH + H++ fk03085 262 QRPVFCPFHK-KEQLKLYCETCDKLTCRDCQLL-EH------KEHRY 300 vpl<-* +++ fk03085 301 QFI 303 PF00628.19.ls: domain 1 of 1, from 872 to 917: score 56.8, E = 6.4e-14 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC +C+vC+ gg+ll+C++C++ fHl+C+ p+l+ + p+++W+C fk03085 872 WCAVCQN-----GGELLCCEKCPKVFHLSCHVPTLT--NFPSgeWIC 911 peCkpk<-* C+ fk03085 912 TFCRDL 917 PF00628.19.fs: domain 3 of 3, from 872 to 917: score 55.0, E = 3.1e-17 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC +C+vC+ gg+ll+C++C++ fHl+C+ p+l+ + p+++W+C fk03085 872 WCAVCQN-----GGELLCCEKCPKVFHLSCHVPTLT--NFPSgeWIC 911 peCkpk<-* C+ fk03085 912 TFCRDL 917 PF00439.15.fs: domain 1 of 1, from 945 to 1036: score 119.5, E = 3.9e-33 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk + +k+ + l+ ++++ + f++ p++l +PDYY+iIk+PMDL+ fk03085 945 TPIDKRKCERLLLFLYCHEMSLAFQD-PVPLTVPDYYKIIKNPMDLS 990 TIkkklkngk..YissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIkk+l++ ++ Y s++e+FvaDf+L+f+N+ +Nepdsev +++k fk03085 991 TIKKRLQEDYsmY-SKPEDFVADFRLIFQNCAEFNEPDSEVANAGIK 1036 PF00439.15.ls: domain 1 of 1, from 945 to 1036: score 121.5, E = 2.3e-33 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk + +k+ + l+ ++++ + f++ p++l +PDYY+iIk+PMDL+ fk03085 945 TPIDKRKCERLLLFLYCHEMSLAFQD-PVPLTVPDYYKIIKNPMDLS 990 TIkkklkngk..YissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIkk+l++ ++ Y s++e+FvaDf+L+f+N+ +Nepdsev +++k fk03085 991 TIKKRLQEDYsmY-SKPEDFVADFRLIFQNCAEFNEPDSEVANAGIK 1036 //