hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-11275888/chunk_1/iprscan-20090618-11275888.nocrc
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Query sequence: fk03085
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00502                                                 158.3      8e-43   1
SM00297                                                 144.9    8.2e-39   1
SM00336                                                 106.5      3e-27   2
SM00249                                                  52.5    5.4e-11   1
SM00184                                                  42.0    8.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00184    1/1     100   174 ..     1    23 []    42.0  8.2e-08
SM00336    1/2     202   249 ..     1    51 []    52.5  5.5e-11
SM00336    2/2     262   303 ..     1    51 []    54.0  1.9e-11
SM00502    1/1     310   436 ..     1   132 []   158.3    8e-43
SM00249    1/1     872   915 ..     1    39 []    52.5  5.4e-11
SM00297    1/1     945  1050 ..     1   118 []   144.9  8.2e-39

Alignments of top-scoring domains:
SM00184: domain 1 of 1, from 100 to 174: score 42.0, E = 8.2e-08
                   *->CpICle......pvvlpCgH.FCr.Ci....................
                      C++C+++ +++ p++lpC H+FC++C++ +++    + +  ++ +++
     fk03085   100    CAVCHQniqsraPKLLPCLHsFCQrCLpapqrylmlpapmlgsaetp 146  

                   ........................CPlC<-*
                   ++ + ++++ +++++  ++ +  +CP+C   
     fk03085   147 ppvpapgspvsgsspfatqvgvirCPVC    174  

SM00336: domain 1 of 2, from 202 to 249: score 52.5, E = 5.5e-11
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      ++ ++C++++d+++a+ fC +e+ ++lC++C +a  Hq++k++++H+
     fk03085   202    KSNQVCTSCEDNAEANGFC-VECVEWLCKTCIRA--HQRVKFTKDHT 245  

                   vvll<-*
                   v+     
     fk03085   246 VRQK    249  

SM00336: domain 2 of 2, from 262 to 303: score 54.0, E = 1.9e-11
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      +r++ C++H+ +e ++++C e++++l CrdC +  eH      + Hr
     fk03085   262    QRPVFCPFHK-KEQLKLYC-ETCDKLTCRDCQLL-EH------KEHR 299  

                   vvll<-*
                   ++++   
     fk03085   300 YQFI    303  

SM00502: domain 1 of 1, from 310 to 436: score 158.3, E = 8e-43
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      q++++ +l++kl++k+++++++++q++++i ev+     +n+++ve+
     fk03085   310    QKVIIDTLITKLMEKTKYIKFTGNQIQNRIIEVN-----QNQKQVEQ 351  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                   +ik+a+++L+ ++n+++k+Ll++Le+ ++++++kL+qQ++   +++++le
     fk03085   352 DIKVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLE 401  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   h+++f+ +a++sg++t+lL+sk+li++rl++ll++   
     fk03085   402 HVMHFSKWAVSSGSSTALLYSKRLITYRLRHLLRA    436  

SM00249: domain 1 of 1, from 872 to 915: score 52.5, E = 5.4e-11
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<-
                      +C vC+ +g+ll+C+ +C++ +H++C+ p+l++ p+g+w+C  C+  
     fk03085   872    WCaVCQNgGeLLCCE-KCPKVFHLsCHVPTLTnFPSGeWICTFCR   915  

                   *
                    
     fk03085     -   -    

SM00297: domain 1 of 1, from 945 to 1050: score 144.9, E = 8.2e-39
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      +p +++k+++ll  l+++++s              F++pv+     v
     fk03085   945    TPIdKRKCERLLLFLYCHEMSL------------AFQDPVPLT---V 976  

                   PDYydiIkkPMDLktIkkklengkY..ssleeFvaDfnLmfsNAktYNep
                   PDYy+iIk+PMDL+tIkk+l++ +   s +e+FvaDf+L+f+N+  +Nep
     fk03085   977 PDYYKIIKNPMDLSTIKKRLQEDYSmySKPEDFVADFRLIFQNCAEFNEP 1026 

                   dsevykdAkkLeklfeeklkelpp<-*
                   dsev  +++kLe++fee+lk l+p   
     fk03085  1027 DSEVANAGIKLENYFEELLKNLYP    1050 

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