hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-00452517/chunk_1/iprscan-20080811-00452517.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk03104 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04044.5.fs Nup133 nucleoporin 887.7 1.8e-286 1 PF04044.5.ls Nup133 nucleoporin 889.7 1.3e-264 1 PF08801.1.fs Nup133 N terminal like 500.9 2.2e-156 1 PF08801.1.ls Nup133 N terminal like 502.6 4.2e-148 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08801.1.fs 1/1 80 489 .. 1 506 [] 500.9 2.2e-156 PF08801.1.ls 1/1 80 489 .. 1 506 [] 502.6 4.2e-148 PF04044.5.fs 1/1 575 1042 .. 1 548 [] 887.7 1.8e-286 PF04044.5.ls 1/1 575 1042 .. 1 548 [] 889.7 1.3e-264 Alignments of top-scoring domains: PF08801.1.fs: domain 1 of 1, from 80 to 489: score 500.9, E = 2.2e-156 *->tesskykaynVskLpaslpvlvseALtdaeddplsgavdsqsGyALv tes + y+V+++++slpv+v+eALt+ae+d++ + ++ + G+A++ fk03104 80 TESVN---YDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACL 123 vsgerlfvWnysstlgsKlsspttltlPlpeessslqsisplpllvlvsp v++e+l++W+++ ++++Kls++++l+lP +++++s ++lv++s+ fk03104 124 VCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWS-------ADLVALSY 166 sagdeeakasssrspPGlliVmspsGlirYWESiasaaslseirqkrkeh s++++ea+++++ +++++ ++G irYW+S+a++ +++e fk03104 167 SSPSGEAHSTQA---VAVMVA-TREGSIRYWPSLAGEDTYTE-------- 204 eglllklssGEkvellvnvepagfilsTssgRllrlsvRgkdsaGkpqls +++++++ +++ l++v++++fils+s ++l+rl + ++++++ fk03104 205 --AFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRL-----IPESSGKIH 247 vrfllnpsqksggGflsgifnrfsslfiggsSvsDkepeivalragsilg ++ l ++ +G+lsgi++++sslf++ s ++ +l ++s+l+ fk03104 248 QHILPQG-----QGMLSGIGRKVSSLFGILS-------PSSDLTLSSVLW 285 rgeerevyvltskgllqvWnvsdngeteilliEdlDvkeaileelqeliW e++ +y+lts++ +++W+++d +e++ + ++D+++a++e+++++iW fk03104 286 DRERSSFYSLTSSN-ISKWELDDSSEKHAY---SWDINRALKENITDAIW 331 gsedpysypasesslkiLDlhpvpdGLdedvRsdastspeglvvLlalvs gse++y+++++++++++LDl+ +d glv+L+a+++ fk03104 332 GSESNYEAIKEGVNIRYLDLKQNCD---------------GLVILAAAWH 366 iasssstaYilvtliWldedessfvifsthplntytspfsfqsesdllkp +a+++++ Y+ +++i +++++++++ +++++++++++fqs +dl+ + fk03104 367 SADNPCLIYYSLITI----EDNGCQMSDAVTVEVTQYNPPFQS-EDLILC 411 rLyiP.kpgatatavtsvFvvfddaVvitslnssldssssqlqaDsyalp +L +P+ +++ta ++++++aV+ +s++ +++ fk03104 412 QLTVPnFSNQTA------YLYNESAVYVCSTG--------------TGKF 441 akwEdvIsFksdvdrekilGsgvesvlsrsenanpavvlltrnsGvvrIe +++++I F++++d +lG+g++ + +++++rnsG+v+I+ fk03104 442 SLPQEKIVFNAQGDS--VLGAGACG---------GVPIIFSRNSGLVSIT 480 Haleedstne<-* ++e++s + fk03104 481 -SRENVSILA 489 PF08801.1.ls: domain 1 of 1, from 80 to 489: score 502.6, E = 4.2e-148 *->tesskykaynVskLpaslpvlvseALtdaeddplsgavdsqsGyALv tes + y+V+++++slpv+v+eALt+ae+d++ + ++ + G+A++ fk03104 80 TESVN---YDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACL 123 vsgerlfvWnysstlgsKlsspttltlPlpeessslqsisplpllvlvsp v++e+l++W+++ ++++Kls++++l+lP +++++s ++lv++s+ fk03104 124 VCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWS-------ADLVALSY 166 sagdeeakasssrspPGlliVmspsGlirYWESiasaaslseirqkrkeh s++++ea+++++ +++++ ++G irYW+S+a++ +++e fk03104 167 SSPSGEAHSTQA---VAVMVA-TREGSIRYWPSLAGEDTYTE-------- 204 eglllklssGEkvellvnvepagfilsTssgRllrlsvRgkdsaGkpqls +++++++ +++ l++v++++fils+s ++l+rl + ++++++ fk03104 205 --AFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRL-----IPESSGKIH 247 vrfllnpsqksggGflsgifnrfsslfiggsSvsDkepeivalragsilg ++ l ++ +G+lsgi++++sslf++ s ++ +l ++s+l+ fk03104 248 QHILPQG-----QGMLSGIGRKVSSLFGILS-------PSSDLTLSSVLW 285 rgeerevyvltskgllqvWnvsdngeteilliEdlDvkeaileelqeliW e++ +y+lts++ +++W+++d +e++ + ++D+++a++e+++++iW fk03104 286 DRERSSFYSLTSSN-ISKWELDDSSEKHAY---SWDINRALKENITDAIW 331 gsedpysypasesslkiLDlhpvpdGLdedvRsdastspeglvvLlalvs gse++y+++++++++++LDl+ +d glv+L+a+++ fk03104 332 GSESNYEAIKEGVNIRYLDLKQNCD---------------GLVILAAAWH 366 iasssstaYilvtliWldedessfvifsthplntytspfsfqsesdllkp +a+++++ Y+ +++i +++++++++ +++++++++++fqs +dl+ + fk03104 367 SADNPCLIYYSLITI----EDNGCQMSDAVTVEVTQYNPPFQS-EDLILC 411 rLyiP.kpgatatavtsvFvvfddaVvitslnssldssssqlqaDsyalp +L +P+ +++ta ++++++aV+ +s++ +++ fk03104 412 QLTVPnFSNQTA------YLYNESAVYVCSTG--------------TGKF 441 akwEdvIsFksdvdrekilGsgvesvlsrsenanpavvlltrnsGvvrIe +++++I F++++d +lG+g++ + +++++rnsG+v+I+ fk03104 442 SLPQEKIVFNAQGDS--VLGAGACG---------GVPIIFSRNSGLVSIT 480 Haleedstne<-* ++e++s + fk03104 481 -SRENVSILA 489 PF04044.5.fs: domain 1 of 1, from 575 to 1042: score 887.7, E = 1.8e-286 *->pedrsikdprweealkdeemeRHAIfnsrsklipplletkmkhlsvr ++d++++dprw+e++++e+++ f+++s++i+++le+kmk++s++ fk03104 575 MDDYPASDPRWAESVPEEAPG----FSNTSLIILHQLEDKMKAHSFL 617 lefLhnllrfvrlnvlpvistslkptrlllldllEKleavayLknfistk ++f+h++++f+rl+++pv++t++ +trlll++++EKl+a+++Lkn ++++ fk03104 618 MDFIHQVGLFGRLGSFPVRGTPM-ATRLLLCEHAEKLSAAIVLKN-HHSR 665 lsklvenaIlekllkrleeiqssdltlkevFlkkvssidlifeqllehve ls+lv++aIl++l+kr++ei+s+ lt+++vF+++vs++d+i+e+lleh+e fk03104 666 LSDLVNTAILIALNKREYEIPSN-LTPADVFFREVSQVDTICECLLEHEE 714 dvlsqsqeqaikvaevivevNnvyldiLgEselaYRqeklslyrlevdtl +vl+++++++i++aev+++vNn+++d+L+ ++++YRq+++slyr+e++++ fk03104 715 QVLRDAPMDSIEWAEVVINVNNILKDMLQ-AASHYRQNRNSLYRREESLE 763 keyEevPWTatvdsLVLLCRqLeliRkalvdSHqGtSdveialkvrdGsk ke+E+vPWTat+++ ++iR+++++ ++ei+lkv++ ++ fk03104 764 KEPEYVPWTATSGP--------GGIRTVIIR------QHEIVLKVAY-PQ 798 dasneklkniLkkQlvaLielvldgyverlksvddtisdaenFqnleeeF ++sn l+ni+++QlvaLi+++ldgyv++lksvd++ s++e+++nle+e+ fk03104 799 ADSN--LRNIVTEQLVALIDCFLDGYVSQLKSVDKS-SNRERYDNLEMEY 845 ednRrdwlqvLlkvgqyekAikiAEKYkDFqsLVqlcdqLdqndsrlvdl +++R+d+l++Ll++gqy++A+++AEKY+DF++LVq+c+q+d n+srl+++ fk03104 846 LQKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTD-NQSRLQRY 894 ltqfadefkiKkeFSdflFeYlvekgklgeLLerfkeqqslLiqFfqaSA +tqfad++ FSdflF++++ekgk+g+LL+++++q+++L++F+qa fk03104 895 MTQFADQN-----FSDFLFRWYLEKGKRGKLLSQPISQHGQLANFLQA-- 937 rdyehlsWiqeiqnGdYerAsetLlelAekeeklGESvakKeseLsLAKL +ehlsW++ei+++++e+A++tLl+lA++e+++ +akK+++L+L+KL fk03104 938 --HEHLSWLHEINSQELEKAHATLLGLANMETRY---FAKKKTLLGLSKL 982 aslavekdsenIrllrkvevkleqLaIlkivekyvemlsdlvdaeedlse a+la sd ++e++l+e fk03104 983 AALA----------------------------------SD--FSEDMLQE 996 kVEkivedlcvalkqesiarqvleslveeLiateVvtaseLveYLSFSLY k+E+++e+++++l+qe++++q+l++++++L+a++V+ta++L++ LY fk03104 997 KIEEMAEQERFLLHQETLPEQLLAEKQLNLSAMPVLTAPQLIG-----LY 1041 s<-* + fk03104 1042 I 1042 PF04044.5.ls: domain 1 of 1, from 575 to 1042: score 889.7, E = 1.3e-264 *->pedrsikdprweealkdeemeRHAIfnsrsklipplletkmkhlsvr ++d++++dprw+e++++e+++ f+++s++i+++le+kmk++s++ fk03104 575 MDDYPASDPRWAESVPEEAPG----FSNTSLIILHQLEDKMKAHSFL 617 lefLhnllrfvrlnvlpvistslkptrlllldllEKleavayLknfistk ++f+h++++f+rl+++pv++t++ +trlll++++EKl+a+++Lkn ++++ fk03104 618 MDFIHQVGLFGRLGSFPVRGTPM-ATRLLLCEHAEKLSAAIVLKN-HHSR 665 lsklvenaIlekllkrleeiqssdltlkevFlkkvssidlifeqllehve ls+lv++aIl++l+kr++ei+s+ lt+++vF+++vs++d+i+e+lleh+e fk03104 666 LSDLVNTAILIALNKREYEIPSN-LTPADVFFREVSQVDTICECLLEHEE 714 dvlsqsqeqaikvaevivevNnvyldiLgEselaYRqeklslyrlevdtl +vl+++++++i++aev+++vNn+++d+L+ ++++YRq+++slyr+e++++ fk03104 715 QVLRDAPMDSIEWAEVVINVNNILKDMLQ-AASHYRQNRNSLYRREESLE 763 keyEevPWTatvdsLVLLCRqLeliRkalvdSHqGtSdveialkvrdGsk ke+E+vPWTat+++ ++iR+++++ ++ei+lkv++ ++ fk03104 764 KEPEYVPWTATSGP--------GGIRTVIIR------QHEIVLKVAY-PQ 798 dasneklkniLkkQlvaLielvldgyverlksvddtisdaenFqnleeeF ++sn l+ni+++QlvaLi+++ldgyv++lksvd++ s++e+++nle+e+ fk03104 799 ADSN--LRNIVTEQLVALIDCFLDGYVSQLKSVDKS-SNRERYDNLEMEY 845 ednRrdwlqvLlkvgqyekAikiAEKYkDFqsLVqlcdqLdqndsrlvdl +++R+d+l++Ll++gqy++A+++AEKY+DF++LVq+c+q+d n+srl+++ fk03104 846 LQKRSDLLSPLLSLGQYLWAASLAEKYCDFDILVQMCEQTD-NQSRLQRY 894 ltqfadefkiKkeFSdflFeYlvekgklgeLLerfkeqqslLiqFfqaSA +tqfad++ FSdflF++++ekgk+g+LL+++++q+++L++F+qa fk03104 895 MTQFADQN-----FSDFLFRWYLEKGKRGKLLSQPISQHGQLANFLQA-- 937 rdyehlsWiqeiqnGdYerAsetLlelAekeeklGESvakKeseLsLAKL +ehlsW++ei+++++e+A++tLl+lA++e+++ +akK+++L+L+KL fk03104 938 --HEHLSWLHEINSQELEKAHATLLGLANMETRY---FAKKKTLLGLSKL 982 aslavekdsenIrllrkvevkleqLaIlkivekyvemlsdlvdaeedlse a+la sd ++e++l+e fk03104 983 AALA----------------------------------SD--FSEDMLQE 996 kVEkivedlcvalkqesiarqvleslveeLiateVvtaseLveYLSFSLY k+E+++e+++++l+qe++++q+l++++++L+a++V+ta++L++ LY fk03104 997 KIEEMAEQERFLLHQETLPEQLLAEKQLNLSAMPVLTAPQLIG-----LY 1041 s<-* + fk03104 1042 I 1042 //