hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-00505847/chunk_1/iprscan-20080811-00505847.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk03255
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00013.19.ls KH domain                                      109.4    9.7e-30   2
PF00013.19.fs KH domain                                      105.8    4.1e-29   2
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           18.1    4.9e-06   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           19.9     0.0013   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00013.19.fs   1/2     150   210 ..     1    73 []    45.4  4.5e-12
PF00013.19.ls   1/2     150   210 ..     1    73 []    47.2  5.2e-11
PF00013.19.fs   2/2     245   304 ..     1    73 []    60.4  2.6e-16
PF00013.19.ls   2/2     245   304 ..     1    73 []    62.2  1.6e-15
PF00097.15.fs   1/1     601   640 ..     1    50 []    18.1  4.9e-06
PF00097.15.ls   1/1     601   640 ..     1    50 []    19.9   0.0013

Alignments of top-scoring domains:
PF00013.19.fs: domain 1 of 2, from 150 to 210: score 45.4, E = 4.5e-12
                   *->tirili.psskvGriIGkgGstIkeIreetGakIdipddgesknlpe
                      t+ + +++s++v  i G++G +Ik++r +t++ I+ p  g      e
     fk03255   150    TECVPVpSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRG------E 190  

                   dplngsgertvtIsGtpeavekAkkli<-*
                   +p       +++++G +e+v+ A+++i   
     fk03255   191 EP-------VFVVTGRKEDVAMARREI    210  

PF00013.19.ls: domain 1 of 2, from 150 to 210: score 47.2, E = 5.2e-11
                   *->tirili.psskvGriIGkgGstIkeIreetGakIdipddgesknlpe
                      t+ + +++s++v  i G++G +Ik++r +t++ I+ p  g      e
     fk03255   150    TECVPVpSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRG------E 190  

                   dplngsgertvtIsGtpeavekAkkli<-*
                   +p       +++++G +e+v+ A+++i   
     fk03255   191 EP-------VFVVTGRKEDVAMARREI    210  

PF00013.19.fs: domain 2 of 2, from 245 to 304: score 60.4, E = 2.6e-16
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ti++ +p + vG++ G++G+tIk+I+++t + I  p+ +      ++
     fk03255   245    TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRD------KE 285  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p       +++++G pe+v++A+++i   
     fk03255   286 P-------VFEVTGMPENVDRAREEI    304  

PF00013.19.ls: domain 2 of 2, from 245 to 304: score 62.2, E = 1.6e-15
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ti++ +p + vG++ G++G+tIk+I+++t + I  p+ +      ++
     fk03255   245    TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRD------KE 285  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p       +++++G pe+v++A+++i   
     fk03255   286 P-------VFEVTGMPENVDRAREEI    304  

PF00097.15.fs: domain 1 of 1, from 601 to 640: score 18.1, E = 4.9e-06
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C+e +  +      + pCgH     +fC +C  r  + + +  C
     fk03255   601    CSVCFESEVIAA-----LVPCGHN----LFCMECANRICE-KSEPEC 637  

                   plC<-*
                   p+C   
     fk03255   638 PVC    640  

PF00097.15.ls: domain 1 of 1, from 601 to 640: score 19.9, E = 0.0013
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C+e +  +      + pCgH     +fC +C  r  + + +  C
     fk03255   601    CSVCFESEVIAA-----LVPCGHN----LFCMECANRICE-KSEPEC 637  

                   plC<-*
                   p+C   
     fk03255   638 PVC    640  

//