hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-00564246/chunk_1/iprscan-20080811-00564246.nocrc
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Query sequence: fk03260
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00146                                                 449.8   1.4e-130   1
SM00145                                                 350.5   1.1e-100   1
SM00144                                                 171.8    6.5e-47   1
SM00143                                                 171.5    8.2e-47   1
SM00142                                                 133.0    3.3e-35   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00143      1/1      32   109 ..     1    80 []   171.5  8.2e-47
SM00144      1/1     174   293 ..     1   116 []   171.8  6.5e-47
SM00142      1/1     323   426 ..     1   133 []   133.0  3.3e-35
SM00145      1/1     519   705 ..     1   232 []   350.5 1.1e-100
SM00146      1/1     799  1066 ..     1   336 []   449.8 1.4e-130

Alignments of top-scoring domains:
SM00143: domain 1 of 1, from 32 to 109: score 171.5, E = 8.2e-47
                   *->lveLrvsrEatlsvIKheLfkqakkmPlgtllkdaqsYvFvqvnqta
                      +v+L+++rEatl +IKheLfk+a+k+Pl++ll+d++sY+Fv+v+q+a
     fk03260    32    IVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEA 78   

                   eiEelfDETrRLsdlrlfGTfPiLkLverdgtn<-*
                   e+Ee+fDETrRL+dlrlf  +P+Lk++e++g++   
     fk03260    79 EREEFFDETRRLCDLRLF--QPFLKVIEPVGNR    109  

SM00144: domain 1 of 1, from 174 to 293: score 171.8, E = 6.5e-47
                   *->ssrlvPeplpkktiankilivvhlekrvhnkqqtktlkvnpnctpds
                      ss+++P+++++k++ ++i++v++++++++n++q++tlk+n++c+p++
     fk03260   174    SSPELPKHIYNKLDKGQIIVVIWVIVSPNNDKQKYTLKINHDCVPEQ 220  

                   vleealtKfakklslhdqedptdeg......dYiLKVcGrdEYllgdhpL
                   v++ea++K  k++s+++++++ +++  + +++YiLKVcG+dEY+l+++pL
     fk03260   221 VIAEAIRK--KTRSMLLSSEQLKLCvleyqgKYILKVCGCDEYFLEKYPL 268  

                   gsfeyirnclkngtephLvLvelsk<-*
                   ++++yir+c+++g++p+L L+++++   
     fk03260   269 SQYKYIRSCIMLGRMPNLMLMAKES    293  

SM00142: domain 1 of 1, from 323 to 426: score 133.0, E = 3.3e-35
                   *->vkiesLwdgkrplvalPhestialihgiplnwsslyesscvdlyvei
                      ++++sLw+++  l+     ++i ++++++ n ++++     ++yv++
     fk03260   323    TSTKSLWVINSALR-----IKILCATYVNVNIRDID-----KIYVRT 359  

                   qLyhGvgkllclpvsTsyknyvkaffnrtiiltvkWnewltftpikisdL
                   ++yhG g++lc +v+T++    ++++n+      +Wnewl++ +i+i+dL
     fk03260   360 GIYHG-GEPLCDNVNTQR----VPCSNP------RWNEWLNY-DIYIPDL 397  

                   PreArLcitiyevkddskksepfgsvlVgssnlslf<-*
                   Pr+ArLc++i++vk  ++k +++     +++ l ++   
     fk03260   398 PRAARLCLSICSVK--GRKGAKE-----EHCPLAWG    426  

SM00145: domain 1 of 1, from 519 to 705: score 350.5, E = 1.1e-100
                   *->drdlkpsldseerdrLeaIlkydplyeLteeekdLiWkfRhyyltnn
                      +rd     +++++++L+aI  +dpl+e+te+ekd++W +Rhy++ + 
     fk03260   519    ARDNEL--RENDKEQLKAISTRDPLSEITEQEKDFLWSHRHYCV-TI 562  

                   pkALplvcgPKfLlsvnWsdadevaqalsLLkkWvnapldpedALELLdp
                   p+ Lp     K+Llsv+W+ +devaq+++L+k+W  +p++pe+A+ELLd+
     fk03260   563 PEILP-----KLLLSVKWNSRDEVAQMYCLVKDW--PPIKPEQAMELLDC 605  

                   kFpdnNvpkVRayAVsrLes.asDeeLllYLLQLVQALKYEnlddiksle
                   ++pd   p+VR +AV++Le+ ++D+ L++YL QLVQ+LKYE         
     fk03260   606 NYPD---PMVRGFAVRCLEKyLTDDKLSQYLIQLVQVLKYE--------- 643  

                   cefdqdvsasktkeedgpyldSpLarFLLeRAlkNpriGhffyWyLksEi
                                    +yld  L+rFLL++Al+N+riGhff+W+LksE+
     fk03260   644 -----------------QYLDNLLVRFLLKKALTNQRIGHFFFWHLKSEM 676  

                   ekddslhdphvserfgllleaylrgctgthlkelkk<-*
                         h++ vs+rfgllle+y+r+c g++lk+l++   
     fk03260   677 ------HNKTVSQRFGLLLESYCRAC-GMYLKHLNR    705  

SM00146: domain 1 of 1, from 799 to 1066: score 449.8, E = 1.4e-130
                   *->avIfKggDDLRQDalvlQllrlmdklLkkdsetrrldLhlrpYkvlp
                       +IfK+gDDLRQD+l+lQ++r+m ++++++    +ldL++ pY++l+
     fk03260   799    EIIFKNGDDLRQDMLTLQIIRIMENIWQNQ----GLDLRMLPYGCLS 841  

                   tgpksGliEvvpnsetlheIlkelrkkkkipldykqlfmldmlvaeieka
                   +g++ GliEvv ns+t+++I++                            
     fk03260   842 IGDCVGLIEVVRNSHTIMQIQC---------------------------- 863  

                   qyptitlakakkkalrykhatlleklkvfegatsafkppvLydwfkekfp
                                             k+ ++ + +f+ ++L++w+k+k++
     fk03260   864 --------------------------KGGLKGALQFNSHTLHQWLKDKNK 887  

                   dpneiyfeardnFtrScAgySvvtYiLGlGDRHndNImldrktGhlfHID
                   ++  iy +a+d FtrScAgy+v+t+iLG+GDRHn+NIm++ ++G+lfHID
     fk03260   888 GE--IYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK-DDGQLFHID 934  

                   FGfilgngpklpgfklfgRErvPFrLTpemvdvmGgG...gkpsgvfglF
                   FG++l++ +k++g+k   RErvPF+LT++++ v+++G +++ ++ +f +F
     fk03260   935 FGHFLDHKKKKFGYK---RERVPFVLTQDFLIVISKGaqeCTKTREFERF 981  

                   rslCerayralRknsnllmnllelMlsdglmpewrsgekdikylrerlrl
                   +++C++ay+a+R+++nl++nl+++Ml++g+ pe++s+ +di+y+r++l l
     fk03260   982 QEMCYKAYLAIRQHANLFINLFSMMLGSGM-PELQSF-DDIAYIRKTLAL 1029 

                   dvlsdeeaaeyfkktektkliessleslttrlndlfhllaql<-*
                   d ++++ea+eyf+k    ++  ++++++tt++ ++fh+++q+   
     fk03260  1030 D-KTEQEALEYFMK----QMNDAHHGGWTTKMDWIFHTIKQH    1066 

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