hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-01155416/chunk_1/iprscan-20080811-01155416.nocrc
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Query sequence: fk03822
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00132.14.fs Bacterial transferase hexapeptide (three rep    32.3      2e-08   3
PF00132.14.ls Bacterial transferase hexapeptide (three rep    38.3    2.4e-08   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00132.14.fs   1/3     109   126 ..     1    18 []    12.7    0.013
PF00132.14.ls   1/3     109   126 ..     1    18 []    14.7     0.32
PF00132.14.fs   2/3     132   149 ..     1    18 []    16.9  0.00072
PF00132.14.ls   2/3     132   149 ..     1    18 []    18.9    0.017
PF00132.14.fs   3/3     178   195 ..     1    18 []     2.7       11
PF00132.14.ls   3/3     178   195 ..     1    18 []     4.7       35

Alignments of top-scoring domains:
PF00132.14.fs: domain 1 of 3, from 109 to 126: score 12.7, E = 0.013
                   *->gviIGdnvvIgpgvvIgd<-*
                      g+i+++nv +g+g+vIg+   
     fk03822   109    GSILEENVLLGSGTVIGS    126  

PF00132.14.ls: domain 1 of 3, from 109 to 126: score 14.7, E = 0.32
                   *->gviIGdnvvIgpgvvIgd<-*
                      g+i+++nv +g+g+vIg+   
     fk03822   109    GSILEENVLLGSGTVIGS    126  

PF00132.14.fs: domain 2 of 3, from 132 to 149: score 16.9, E = 0.00072
                   *->gviIGdnvvIgpgvvIgd<-*
                      +++IG++++Ig++vv+     
     fk03822   132    NSVIGPGCHIGDNVVLDQ    149  

PF00132.14.ls: domain 2 of 3, from 132 to 149: score 18.9, E = 0.017
                   *->gviIGdnvvIgpgvvIgd<-*
                      +++IG++++Ig++vv+     
     fk03822   132    NSVIGPGCHIGDNVVLDQ    149  

PF00132.14.fs: domain 3 of 3, from 178 to 195: score 2.7, E = 11
                   *->gviIGdnvvIgpgvvIgd<-*
                       v++ +++v+ + vv+g+   
     fk03822   178    RVTLKPRSVLTSQVVVGP    195  

PF00132.14.ls: domain 3 of 3, from 178 to 195: score 4.7, E = 35
                   *->gviIGdnvvIgpgvvIgd<-*
                       v++ +++v+ + vv+g+   
     fk03822   178    RVTLKPRSVLTSQVVVGP    195  

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