# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk03930.fasta.nr -Q fk03930.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk03930, 185 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842363 sequences Expectation_n fit: rho(ln(x))= 4.8892+/-0.00018; mu= 8.9156+/- 0.010 mean_var=60.6054+/-11.851, 0's: 36 Z-trim: 42 B-trim: 0 in 0/66 Lambda= 0.164747 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088132|dbj|BAD92513.1| alpha 1,2-mannosidase ( 185) 1301 316.9 9.2e-85 gi|22760079|dbj|BAC11060.1| unnamed protein produc ( 178) 1162 283.9 7.9e-75 gi|193785866|dbj|BAG54653.1| unnamed protein produ ( 372) 1162 284.1 1.4e-74 gi|119608752|gb|EAW88346.1| mannosidase, alpha, cl ( 402) 1162 284.1 1.5e-74 gi|13096545|pdb|1FO2|A Chain A, Crystal Structure ( 460) 1162 284.2 1.7e-74 gi|61680321|pdb|1X9D|A Chain A, Crystal Structure ( 538) 1162 284.2 1.9e-74 gi|194391146|dbj|BAG60691.1| unnamed protein produ ( 586) 1162 284.2 2.1e-74 gi|5579331|gb|AAD45504.1|AF145732_1 endoplasmic re ( 663) 1162 284.3 2.3e-74 gi|6066222|gb|AAF03215.1|AF148509_1 alpha 1,2-mann ( 699) 1162 284.3 2.4e-74 gi|93195043|sp|Q9UKM7.2|MA1B1_HUMAN Endoplasmic re ( 699) 1162 284.3 2.4e-74 gi|119608753|gb|EAW88347.1| mannosidase, alpha, cl ( 702) 1162 284.3 2.4e-74 gi|114627678|ref|XP_528469.2| PREDICTED: alpha 1,2 ( 570) 1158 283.3 3.9e-74 gi|114627676|ref|XP_001135582.1| PREDICTED: alpha ( 600) 1158 283.3 4e-74 gi|114627672|ref|XP_001135666.1| PREDICTED: alpha ( 615) 1158 283.3 4.1e-74 gi|114627670|ref|XP_001135495.1| PREDICTED: alpha ( 635) 1158 283.3 4.2e-74 gi|114627662|ref|XP_001135997.1| PREDICTED: alpha ( 699) 1158 283.3 4.6e-74 gi|109109681|ref|XP_001090775.1| PREDICTED: alpha ( 600) 1156 282.8 5.6e-74 gi|109109679|ref|XP_001091256.1| PREDICTED: alpha ( 699) 1156 282.8 6.4e-74 gi|57997031|emb|CAB53680.2| hypothetical protein [ ( 298) 1150 281.2 8.6e-74 gi|13096544|pdb|1FMI|A Chain A, Crystal Structure ( 458) 1147 280.6 2e-73 gi|194226070|ref|XP_001917542.1| PREDICTED: mannos ( 673) 1032 253.4 4.6e-65 gi|73967469|ref|XP_848600.1| PREDICTED: similar to ( 254) 1024 251.2 7.8e-65 gi|73967467|ref|XP_537786.2| PREDICTED: similar to ( 660) 1024 251.5 1.7e-64 gi|26353544|dbj|BAC40402.1| unnamed protein produc ( 459) 989 243.0 4e-62 gi|13879340|gb|AAH06645.1| Man1b1 protein [Mus mus ( 569) 989 243.1 4.8e-62 gi|123227494|emb|CAM25606.1| mannosidase alpha cla ( 658) 989 243.1 5.4e-62 gi|19344070|gb|AAH25500.1| Man1b1 protein [Mus mus ( 247) 982 241.2 7.7e-62 gi|149039381|gb|EDL93601.1| similar to Endoplasmic ( 657) 986 242.4 8.8e-62 gi|183985961|gb|AAI66449.1| Man1b1 protein [Rattus ( 676) 986 242.4 9e-62 gi|118099085|ref|XP_415569.2| PREDICTED: similar t ( 675) 949 233.6 4e-59 gi|126302840|ref|XP_001374485.1| PREDICTED: simila ( 710) 932 229.6 6.8e-58 gi|47207272|emb|CAF93587.1| unnamed protein produc ( 620) 892 220.1 4.5e-55 gi|125847645|ref|XP_691064.2| PREDICTED: similar t ( 682) 886 218.7 1.3e-54 gi|148726406|emb|CAN88131.1| novel protein similar ( 632) 882 217.7 2.4e-54 gi|51261578|gb|AAH79920.1| MGC78858 protein [Xenop ( 641) 875 216.0 7.6e-54 gi|166796323|gb|AAI59155.1| Unknown (protein for M ( 650) 857 211.8 1.5e-52 gi|115662503|ref|XP_001203783.1| PREDICTED: hypoth ( 403) 757 187.9 1.4e-45 gi|57163121|emb|CAH72871.2| mannosidase, alpha, cl ( 329) 712 177.1 2e-42 gi|194386614|dbj|BAG61117.1| unnamed protein produ ( 695) 712 177.3 3.7e-42 gi|119608751|gb|EAW88345.1| mannosidase, alpha, cl ( 734) 712 177.3 3.9e-42 gi|114627664|ref|XP_001135913.1| PREDICTED: alpha ( 686) 708 176.4 7.1e-42 gi|114627666|ref|XP_001135834.1| PREDICTED: alpha ( 843) 702 175.0 2.2e-41 gi|91078826|ref|XP_971080.1| PREDICTED: similar to ( 581) 676 168.7 1.2e-39 gi|163779089|gb|EDQ92703.1| predicted protein [Mon ( 434) 647 161.7 1.1e-37 gi|108878159|gb|EAT42384.1| endoplasmic reticulum ( 602) 640 160.2 4.7e-37 gi|193606147|ref|XP_001943442.1| PREDICTED: simila ( 622) 637 159.5 7.9e-37 gi|167876992|gb|EDS40375.1| conserved hypothetical ( 656) 637 159.5 8.2e-37 gi|47206853|emb|CAF90613.1| unnamed protein produc ( 547) 633 158.5 1.4e-36 gi|15718649|gb|AAA82446.2| Hypothetical protein T0 ( 584) 630 157.8 2.4e-36 gi|190587961|gb|EDV28003.1| hypothetical protein T ( 559) 629 157.5 2.7e-36 >>gi|62088132|dbj|BAD92513.1| alpha 1,2-mannosidase vari (185 aa) initn: 1301 init1: 1301 opt: 1301 Z-score: 1676.9 bits: 316.9 E(): 9.2e-85 Smith-Waterman score: 1301; 100.000% identity (100.000% similar) in 185 aa overlap (1-185:1-185) 10 20 30 40 50 60 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHF 10 20 30 40 50 60 70 80 90 100 110 120 fk0393 NLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVP 70 80 90 100 110 120 130 140 150 160 170 180 fk0393 SGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLP 130 140 150 160 170 180 fk0393 IWTPA ::::: gi|620 IWTPA >>gi|22760079|dbj|BAC11060.1| unnamed protein product [H (178 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1498.6 bits: 283.9 E(): 7.9e-75 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:10-178) 10 20 30 40 50 60 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHF :::::::::::::::::::::::::::::::::::::::::::: gi|227 MDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHF 10 20 30 40 50 70 80 90 100 110 120 fk0393 NLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|227 NLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVP 60 70 80 90 100 110 130 140 150 160 170 180 fk0393 SGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLP :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|227 SGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLP 120 130 140 150 160 170 fk0393 IWTPA ::::: gi|227 IWTPA >>gi|193785866|dbj|BAG54653.1| unnamed protein product [ (372 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1494.0 bits: 284.1 E(): 1.4e-74 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:204-372) 10 20 30 40 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMN :::::::::::::::::::::::::::::: gi|193 HSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 180 190 200 210 220 230 50 60 70 80 90 100 fk0393 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG 240 250 260 270 280 290 110 120 130 140 150 160 fk0393 WEILQSFSRFTRVPSGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|193 WEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS 300 310 320 330 340 350 170 180 fk0393 LDAYVFNTEAHPLPIWTPA ::::::::::::::::::: gi|193 LDAYVFNTEAHPLPIWTPA 360 370 >>gi|119608752|gb|EAW88346.1| mannosidase, alpha, class (402 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1493.5 bits: 284.1 E(): 1.5e-74 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:234-402) 10 20 30 40 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMN :::::::::::::::::::::::::::::: gi|119 HSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 210 220 230 240 250 260 50 60 70 80 90 100 fk0393 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG 270 280 290 300 310 320 110 120 130 140 150 160 fk0393 WEILQSFSRFTRVPSGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|119 WEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS 330 340 350 360 370 380 170 180 fk0393 LDAYVFNTEAHPLPIWTPA ::::::::::::::::::: gi|119 LDAYVFNTEAHPLPIWTPA 390 400 >>gi|13096545|pdb|1FO2|A Chain A, Crystal Structure Of H (460 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1492.7 bits: 284.2 E(): 1.7e-74 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:292-460) 10 20 30 40 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMN :::::::::::::::::::::::::::::: gi|130 HSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 270 280 290 300 310 320 50 60 70 80 90 100 fk0393 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG 330 340 350 360 370 380 110 120 130 140 150 160 fk0393 WEILQSFSRFTRVPSGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|130 WEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS 390 400 410 420 430 440 170 180 fk0393 LDAYVFNTEAHPLPIWTPA ::::::::::::::::::: gi|130 LDAYVFNTEAHPLPIWTPA 450 460 >>gi|61680321|pdb|1X9D|A Chain A, Crystal Structure Of H (538 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1491.7 bits: 284.2 E(): 1.9e-74 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:370-538) 10 20 30 40 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMN :::::::::::::::::::::::::::::: gi|616 HSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 340 350 360 370 380 390 50 60 70 80 90 100 fk0393 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|616 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG 400 410 420 430 440 450 110 120 130 140 150 160 fk0393 WEILQSFSRFTRVPSGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|616 WEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS 460 470 480 490 500 510 170 180 fk0393 LDAYVFNTEAHPLPIWTPA ::::::::::::::::::: gi|616 LDAYVFNTEAHPLPIWTPA 520 530 >>gi|194391146|dbj|BAG60691.1| unnamed protein product [ (586 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1491.1 bits: 284.2 E(): 2.1e-74 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:418-586) 10 20 30 40 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMN :::::::::::::::::::::::::::::: gi|194 HSEPSKLTFVGELAHGRFSAKTDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 390 400 410 420 430 440 50 60 70 80 90 100 fk0393 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG 450 460 470 480 490 500 110 120 130 140 150 160 fk0393 WEILQSFSRFTRVPSGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|194 WEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS 510 520 530 540 550 560 170 180 fk0393 LDAYVFNTEAHPLPIWTPA ::::::::::::::::::: gi|194 LDAYVFNTEAHPLPIWTPA 570 580 >>gi|5579331|gb|AAD45504.1|AF145732_1 endoplasmic reticu (663 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1490.4 bits: 284.3 E(): 2.3e-74 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:495-663) 10 20 30 40 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMN :::::::::::::::::::::::::::::: gi|557 HSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 470 480 490 500 510 520 50 60 70 80 90 100 fk0393 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG 530 540 550 560 570 580 110 120 130 140 150 160 fk0393 WEILQSFSRFTRVPSGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|557 WEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS 590 600 610 620 630 640 170 180 fk0393 LDAYVFNTEAHPLPIWTPA ::::::::::::::::::: gi|557 LDAYVFNTEAHPLPIWTPA 650 660 >>gi|6066222|gb|AAF03215.1|AF148509_1 alpha 1,2-mannosid (699 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1490.0 bits: 284.3 E(): 2.4e-74 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:531-699) 10 20 30 40 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMN :::::::::::::::::::::::::::::: gi|606 HSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 510 520 530 540 550 560 50 60 70 80 90 100 fk0393 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|606 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG 570 580 590 600 610 620 110 120 130 140 150 160 fk0393 WEILQSFSRFTRVPSGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|606 WEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS 630 640 650 660 670 680 170 180 fk0393 LDAYVFNTEAHPLPIWTPA ::::::::::::::::::: gi|606 LDAYVFNTEAHPLPIWTPA 690 >>gi|93195043|sp|Q9UKM7.2|MA1B1_HUMAN Endoplasmic reticu (699 aa) initn: 1162 init1: 1162 opt: 1162 Z-score: 1490.0 bits: 284.3 E(): 2.4e-74 Smith-Waterman score: 1162; 99.408% identity (100.000% similar) in 169 aa overlap (17-185:531-699) 10 20 30 40 fk0393 AHLCGGACPRPLQCQDGTLALGVYHGLPASHMELAQELMETCYQMN :::::::::::::::::::::::::::::: gi|931 HSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMN 510 520 530 540 550 560 50 60 70 80 90 100 fk0393 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|931 RQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWG 570 580 590 600 610 620 110 120 130 140 150 160 fk0393 WEILQSFSRFTRVPSGGYSSINNAQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|931 WEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLS 630 640 650 660 670 680 170 180 fk0393 LDAYVFNTEAHPLPIWTPA ::::::::::::::::::: gi|931 LDAYVFNTEAHPLPIWTPA 690 185 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 01:19:26 2008 done: Mon Aug 11 01:22:19 2008 Total Scan time: 618.440 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]