hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-01281156/chunk_1/iprscan-20080811-01281156.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk03978 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00617.10.ls RasGEF domain 334.7 1.5e-97 1 PF00617.10.fs RasGEF domain 332.9 5.1e-97 1 PF00621.11.fs RhoGEF domain 272.3 2.5e-80 1 PF00621.11.ls RhoGEF domain 274.1 2.6e-79 1 PF00618.10.fs Guanine nucleotide exchange factor for Ras-l 129.0 5e-37 1 PF00618.10.ls Guanine nucleotide exchange factor for Ras-l 131.0 3.1e-36 1 PF00169.19.fs PH domain 40.9 5.5e-12 2 PF00169.19.ls PH domain 40.4 5.7e-09 1 PF00612.17.fs IQ calmodulin-binding motif 20.0 6.8e-05 1 PF00612.17.ls IQ calmodulin-binding motif 22.0 0.0019 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00612.17.fs 1/1 89 109 .. 1 21 [] 20.0 6.8e-05 PF00612.17.ls 1/1 89 109 .. 1 21 [] 22.0 0.0019 PF00621.11.ls 1/1 130 311 .. 1 207 [] 274.1 2.6e-79 PF00621.11.fs 1/1 130 311 .. 1 207 [] 272.3 2.5e-80 PF00169.19.ls 1/1 343 470 .. 1 92 [] 40.4 5.7e-09 PF00169.19.fs 2/2 343 470 .. 1 92 [] 38.4 3.2e-11 PF00618.10.ls 1/1 520 852 .. 1 109 [] 131.0 3.1e-36 PF00618.10.fs 1/1 520 852 .. 1 109 [] 129.0 5e-37 PF00617.10.fs 1/1 905 1090 .. 1 227 [] 332.9 5.1e-97 PF00617.10.ls 1/1 905 1090 .. 1 227 [] 334.7 1.5e-97 Alignments of top-scoring domains: PF00612.17.fs: domain 1 of 1, from 89 to 109: score 20.0, E = 6.8e-05 *->rraaikIQaawRGylaRkryk<-* + + k+Q++ RG+l+R++ k fk03978 89 IKKIKKVQSFLRGWLCRRKWK 109 PF00612.17.ls: domain 1 of 1, from 89 to 109: score 22.0, E = 0.0019 *->rraaikIQaawRGylaRkryk<-* + + k+Q++ RG+l+R++ k fk03978 89 IKKIKKVQSFLRGWLCRRKWK 109 PF00621.11.ls: domain 1 of 1, from 130 to 311: score 274.1, E = 2.6e-79 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v++++le+E++Yv++L+il+n++++pLr+aa+s+kp++t+dd+++iF fk03978 130 VVFSMLEAEAEYVQQLHILVNNFLRPLRMAASSKKPPITHDDVSSIF 176 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N e+i+++h++F++ +L+ariss+ ++++l+dlF++l fk03978 177 LNSETIMFLHQIFYQ-GLKARISSW------------PTLVLADLFDIL- 212 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd +++l++Y+e+++n++y+ ++l++ +++n++F+++l+ +ea+++++ fk03978 213 LPMLNIYQEFVRNHQYSLQILAH---CKQNRDFDKLLKHYEAKPDCE--- 256 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda ++tL+++L++P+++i+rY+L+L+eLL+htp+ ++ e+++L++a+++ fk03978 257 ---ERTLETFLTYPMFQIPRYILTLHELLAHTPH--EHVERNSLDYAKSK 301 lqdlaksiNe<-* l++l++++++ fk03978 302 LEELSRIMHD 311 PF00621.11.fs: domain 1 of 1, from 130 to 311: score 272.3, E = 2.5e-80 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v++++le+E++Yv++L+il+n++++pLr+aa+s+kp++t+dd+++iF fk03978 130 VVFSMLEAEAEYVQQLHILVNNFLRPLRMAASSKKPPITHDDVSSIF 176 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N e+i+++h++F++ +L+ariss+ ++++l+dlF++l fk03978 177 LNSETIMFLHQIFYQ-GLKARISSW------------PTLVLADLFDIL- 212 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd +++l++Y+e+++n++y+ ++l++ +++n++F+++l+ +ea+++++ fk03978 213 LPMLNIYQEFVRNHQYSLQILAH---CKQNRDFDKLLKHYEAKPDCE--- 256 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda ++tL+++L++P+++i+rY+L+L+eLL+htp+ ++ e+++L++a+++ fk03978 257 ---ERTLETFLTYPMFQIPRYILTLHELLAHTPH--EHVERNSLDYAKSK 301 lqdlaksiNe<-* l++l++++++ fk03978 302 LEELSRIMHD 311 PF00169.19.ls: domain 1 of 1, from 343 to 470: score 40.4, E = 5.7e-09 *->vikeGwLlkkg...............gkkswkkRyfvLfddvLlyyk +++G L + +++++ ++++ ++ ++k+ +R ++Lf+++L+++ fk03978 343 FVRQGSLIQVPmsekgkitrgrlgslSLKKEGERQCFLFSKHLIICT 389 dkk.....kkpkgsipLsgiqvtkvpdn.............krkncFeir +++++ + ++ g+i+L ++++ + p++++++ ++++++ + ++ + + fk03978 390 RGSggklhLTKNGVISLIDCTLLEEPESteeeakgsgqdidHLDFKIGVE 439 t.dr..etlllqaeseeerkeWvkaiqsair<-* +d ++ t++l a+s +e+ W ++i++++ fk03978 440 PkDSppFTVILVASSRQEKAAWTSDISQCVD 470 PF00169.19.fs: domain 2 of 2, from 343 to 470: score 38.4, E = 3.2e-11 *->vikeGwLlkkg...............gkkswkkRyfvLfddvLlyyk +++G L + +++++ ++++ ++ ++k+ +R ++Lf+++L+++ fk03978 343 FVRQGSLIQVPmsekgkitrgrlgslSLKKEGERQCFLFSKHLIICT 389 dkk.....kkpkgsipLsgiqvtkvpdn.............krkncFeir +++++ + ++ g+i+L ++++ + p++++++ ++++++ + ++ + + fk03978 390 RGSggklhLTKNGVISLIDCTLLEEPESteeeakgsgqdidHLDFKIGVE 439 t.dr..etlllqaeseeerkeWvkaiqsair<-* +d ++ t++l a+s +e+ W ++i++++ fk03978 440 PkDSppFTVILVASSRQEKAAWTSDISQCVD 470 PF00618.10.ls: domain 1 of 1, from 520 to 852: score 131.0, E = 3.1e-36 *->qvkagtlekLvehLtshsklDssFvstFLlTYRsFttpaeLlekLie q++++++e+L+e+Lt+ ++l+++F++tFL++YR+Ftt++ +l+kLi fk03978 520 QIRYASVERLLERLTDLRFLSIDFLNTFLHSYRVFTTAIVVLDKLIT 566 Ry.w.............................................. y+++ + + ++ + ++++++ ++++++++ +++ +++++ + + fk03978 567 IYkKpisaiparslellfasgqnnkllygeppkspratrkfssppplsit 616 ..seippp.nlqssknsweekkk........................... ++s +++ ++l++++++ +++k+ + + ++++ ++ + ++ ++ + fk03978 617 ktSSPSRRrKLSLNIPIITGGKAldlaalscnsngytsmysamspfskat 666 .................................................. ++++ +++ +++ +++++++++++++++ ++++++ + +++++ ++ fk03978 667 ldtsklyvsssftnkipdegdttpekpedpsalskqssevsmreesdidq 716 .................................................. +++++++++++++++++++++ +++++++ + + +++ ++ ++ +++ fk03978 717 nqsddgdtetsptkspttpksvknknssefplfsynngvvmtscreldnn 766 .................................................l ++ + + + + +++++++++ ++ + + + ++++++++++ + fk03978 767 rsalsaasafaiataganegtpnkekyrrmslasagfppdqrngdkefvI 816 lkpiqlrvlnvlrhWvenyfeDFadeddpellsrLleF<-* ++ + +rvlnvlrhWv+++ +DF e+++el+ +++ F fk03978 817 RRAATNRVLNVLRHWVSKHSQDF--ETNDELKCKVIGF 852 PF00618.10.fs: domain 1 of 1, from 520 to 852: score 129.0, E = 5e-37 *->qvkagtlekLvehLtshsklDssFvstFLlTYRsFttpaeLlekLie q++++++e+L+e+Lt+ ++l+++F++tFL++YR+Ftt++ +l+kLi fk03978 520 QIRYASVERLLERLTDLRFLSIDFLNTFLHSYRVFTTAIVVLDKLIT 566 Ry.w.............................................. y+++ + + ++ + ++++++ ++++++++ +++ +++++ + + fk03978 567 IYkKpisaiparslellfasgqnnkllygeppkspratrkfssppplsit 616 ..seippp.nlqssknsweekkk........................... ++s +++ ++l++++++ +++k+ + + ++++ ++ + ++ ++ + fk03978 617 ktSSPSRRrKLSLNIPIITGGKAldlaalscnsngytsmysamspfskat 666 .................................................. ++++ +++ +++ +++++++++++++++ ++++++ + +++++ ++ fk03978 667 ldtsklyvsssftnkipdegdttpekpedpsalskqssevsmreesdidq 716 .................................................. +++++++++++++++++++++ +++++++ + + +++ ++ ++ +++ fk03978 717 nqsddgdtetsptkspttpksvknknssefplfsynngvvmtscreldnn 766 .................................................l ++ + + + + +++++++++ ++ + + + ++++++++++ + fk03978 767 rsalsaasafaiataganegtpnkekyrrmslasagfppdqrngdkefvI 816 lkpiqlrvlnvlrhWvenyfeDFadeddpellsrLleF<-* ++ + +rvlnvlrhWv+++ +DF e+++el+ +++ F fk03978 817 RRAATNRVLNVLRHWVSKHSQDF--ETNDELKCKVIGF 852 PF00617.10.fs: domain 1 of 1, from 905 to 1090: score 332.9, E = 5.1e-97 *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk +++++le+A+QLTLl+h +fkkI+++ef+g q+W+k+ fk03978 905 ENHSALEIAEQLTLLDHLVFKKIPYEEFFG--------QGWMKL--- 940 vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev +kner+p+i+kt+k+fN +n ++++I+++e d+ +R+++ fk03978 941 EKNERTPYIMKTTKHFNDISNLIASEIIRNE-----------DINARVSA 979 iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI i+k+++VAd+cR+L+N+n++l+I+s++++s+I+RLkkTW kv++q+++l fk03978 980 IEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKAL- 1028 feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs ++L+kL++s+++f+n+Re Lk+++p PCVP++G+YL+ fk03978 1029 IDKLQKLVSSEGRFKNLREALKNCDP-------------PCVPYLGMYLT 1065 DLtfleeGnpdyleekKINtnlvNFsKrrk<-* DL f+eeG+p+y+e ++lvNFsK+r+ fk03978 1066 DLAFIEEGTPNYTE-----DGLVNFSKMRM 1090 PF00617.10.ls: domain 1 of 1, from 905 to 1090: score 334.7, E = 1.5e-97 *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk +++++le+A+QLTLl+h +fkkI+++ef+g q+W+k+ fk03978 905 ENHSALEIAEQLTLLDHLVFKKIPYEEFFG--------QGWMKL--- 940 vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev +kner+p+i+kt+k+fN +n ++++I+++e d+ +R+++ fk03978 941 EKNERTPYIMKTTKHFNDISNLIASEIIRNE-----------DINARVSA 979 iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI i+k+++VAd+cR+L+N+n++l+I+s++++s+I+RLkkTW kv++q+++l fk03978 980 IEKWVAVADICRCLHNYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKAL- 1028 feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs ++L+kL++s+++f+n+Re Lk+++p PCVP++G+YL+ fk03978 1029 IDKLQKLVSSEGRFKNLREALKNCDP-------------PCVPYLGMYLT 1065 DLtfleeGnpdyleekKINtnlvNFsKrrk<-* DL f+eeG+p+y+e ++lvNFsK+r+ fk03978 1066 DLAFIEEGTPNYTE-----DGLVNFSKMRM 1090 //