hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-01281156/chunk_1/iprscan-20080811-01281156.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk03978
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00147                                                 347.3   9.8e-100   1
SM00325                                                 201.7    6.8e-56   1
SM00229                                                  65.9    5.2e-15   2
SM00233                                                  39.1    6.1e-07   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     130   311 ..     1   211 []   201.7  6.8e-56
SM00233     1/1     343   472 ..     1    82 []    39.1  6.1e-07
SM00229     1/2     516   652 ..     1   172 []    46.9  2.6e-09
SM00229     2/2     751   878 ..     1   172 []    18.9     0.01
SM00147     1/1     904  1141 ..     1   261 []   347.3 9.8e-100

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 130 to 311: score 201.7, E = 6.8e-56
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v++ +l+ E++YV++L+ilv++fl+pL++ a+s++ p++++d+v ++
     fk03978   130    VVFSMLEAEAEYVQQLHILVNNFLRPLRMAASSKK-PPITHDDVSSI 175  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F  N e+i  +H++F++ L++r++ w                ++ +++d+
     fk03978   176 FL-NSETIMFLHQIFYQGLKARISSW----------------PTLVLADL 208  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   F+ l   +++++iY+e+++nh+++l++l++   +k+n +F k lk  e+k
     fk03978   209 FDIL---LPMLNIYQEFVRNHQYSLQILAH---CKQNRDFDKLLKHYEAK 252  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   p c+      +tLe++L  P+  +++Y+L L+ell htp++h +r+ L  
     fk03978   253 PDCE-----ERTLETFLTYPMFQIPRYILTLHELLAHTPHEHVERNSLDY 297  

                   AleaikelasqvNe<-*
                   A  +++el + +++   
     fk03978   298 AKSKLEELSRIMHD    311  

SM00233: domain 1 of 1, from 343 to 472: score 39.1, E = 6.1e-07
                   *->vikeGwLlkks................k.swkkryfvLfngvLlyyk
                      ++++G L +   + +++ ++++ ++ ++++  +r ++Lf++ L+++ 
     fk03978   343    FVRQGSLIQVPmsekgkitrgrlgslsLkKEGERQCFLFSKHLIICT 389  

                   sk.......kpkgsipLsgcsvre.p...................cFeiv
                     ++++ + ++ g+i+L +c++ e+p++ +++ ++++ + ++ +  + + 
     fk03978   390 RGsggklhlTKNGVISLIDCTLLEePesteeeakgsgqdidhldfKIGVE 439  

                   t.dr...tlllqAeseeereeWvealqsaiaka<-*
                    +d ++ t +l A+s +e+  W + + +++++    
     fk03978   440 PkDSppfTVILVASSRQEKAAWTSDISQCVDNI    472  

SM00229: domain 1 of 2, from 516 to 652: score 46.9, E = 2.6e-09
                   *->ckggliKgGtlekLiehLteardkgkvdlkaDptfvetFLlTYRsFi
                      ck+ +i+++++e+L+e+Lt+ r+        +++f++tFL+ YR+F+
     fk03978   516    CKVLQIRYASVERLLERLTDLRF-------LSIDFLNTFLHSYRVFT 555  

                   ttqeLlqkLldrYnaippeivsrSlelkateaseglsfedysknaipvgf
                   t   +l+kL+ +Y+++ + i++rSlel          f  +         
     fk03978   556 TAIVVLDKLITIYKKPISAIPARSLEL---------LFASG--------- 587  

                   aetdiivkekvnprriqnrVlnilrlWvenywedFeedpklnlfLeelfl
                   ++ +    e+  ++r +++        +++ +    +  ++ ++ ++l l
     fk03978   588 QNNKLLYGEPPKSPRATRK--------FSSPPPLSITKTSSPSRRRKLSL 629  

                   elvedkkdkgpglekslanilerls<-*
                   +    +   g +l   ++  + +++   
     fk03978   630 NIPIIT--GGKALDLAALSCNSNGY    652  

SM00229: domain 2 of 2, from 751 to 878: score 18.9, E = 0.01
                   *->ckggliKgGtlekLiehLteardkgkvdlkaDptfvetFLlTYRsFi
                       + g+++  t ++ +    +a+++      a+ + ++t         
     fk03978   751    YNNGVVM--TSCRELDNNRSALSA------ASAFAIAT--------A 781  

                   ttqeLlqkLldrYnaippeivsrSlelkateaseglsfedysknaipvgf
                     +e    + ++ +    +                             gf
     fk03978   782 GANEGTPNKEKYRRMSLAS----------------------------AGF 803  

                   .aetdiivkekvnprriqnrVlnilrlWvenywedFeedpklnlfLeelf
                   + ++++ +ke+v++r  +nrVln+lr+Wv+++++dFe++++l+  +   f
     fk03978   804 pPDQRNGDKEFVIRRAATNRVLNVLRHWVSKHSQDFETNDELKCKVIG-F 852  

                   lelvedkkdkgpglekslanilerls<-*
                   le v+++++ +++++k +ani++ l+   
     fk03978   853 LEEVMHDPELLTQERKAAANIIRTLT    878  

SM00147: domain 1 of 1, from 904 to 1141: score 347.3, E = 9.8e-100
                   *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap
                      + ++++ e+AeQLTlld+ +F+kI ++E+ g+ w+k +k++++p   
     fk03978   904    FENHSALEIAEQLTLLDHLVFKKIPYEEFFGQGWMKLEKNERTP--- 947  

                   qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn
                     +++++++fN +sn +a+eI++ ++     R+  ++k++ VA+ cr+L+
     fk03978   948 -YIMKTTKHFNDISNLIASEIIRNED--INARVSAIEKWVAVADICRCLH 994  

                   NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk
                   N+n +++I+s ++ s+I RLkkTW k+s+++k l ++L++l++++ ++fk
     fk03978   995 NYNAVLEITSSMNRSAIFRLKKTWLKVSKQTKALIDKLQKLVSSE-GRFK 1043 

                   nYReaLkscnkspnvqppcvPflGvyLkDLtfidegnpdflengtkglvN
                   n ReaLk+c       ppcvP+lG+yL+DL+fi+eg+p+++e+   glvN
     fk03978  1044 NLREALKNCD------PPCVPYLGMYLTDLAFIEEGTPNYTED---GLVN 1084 

                   FeKrrkiakilreirqlqsacqpynlkpnrndiqellrasrplevlpeee
                   F+K+r+i++i+reirq+q+  + y ++++ ++ q+ll++   + v++ee 
     fk03978  1085 FSKMRMISHIIREIRQFQQ--TAYKIEHQAKVTQYLLDQ---SFVMDEE- 1128 

                   delyelSlriEPrv<-*
                     lye SlriEP+    
     fk03978  1129 -SLYESSLRIEPKL    1141 

//