# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk04076.fasta.nr -Q fk04076.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk04076, 518 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6830177 sequences Expectation_n fit: rho(ln(x))= 6.4848+/-0.000208; mu= 7.2780+/- 0.012 mean_var=138.7358+/-26.816, 0's: 37 Z-trim: 67 B-trim: 0 in 0/65 Lambda= 0.108888 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088136|dbj|BAD92515.1| semaphorin 6B isoform ( 518) 3610 578.5 1.4e-162 gi|12081907|dbj|BAB20669.1| semaphorin Z [Homo sap ( 888) 3512 563.3 8.5e-158 gi|116242786|sp|Q9H3T3.4|SEM6B_HUMAN Semaphorin-6B ( 888) 3512 563.3 8.5e-158 gi|114674747|ref|XP_001139016.1| PREDICTED: semaph ( 877) 3490 559.8 9.3e-157 gi|148691773|gb|EDL23720.1| sema domain, transmemb ( 631) 2925 470.9 3.8e-130 gi|74141579|dbj|BAE38558.1| unnamed protein produc ( 886) 2925 471.1 4.9e-130 gi|8134709|sp|O54951.1|SEM6B_MOUSE Semaphorin-6B p ( 886) 2925 471.1 4.9e-130 gi|8134705|sp|O70141.1|SEM6B_RAT Semaphorin-6B pre ( 887) 2861 461.0 5.2e-127 gi|149028217|gb|EDL83655.1| sema domain, transmemb ( 931) 2861 461.0 5.4e-127 gi|119929270|ref|XP_605966.3| PREDICTED: similar t ( 845) 2571 415.4 2.6e-113 gi|119894936|ref|XP_001255402.1| PREDICTED: sema d ( 818) 2383 385.9 2e-104 gi|114674745|ref|XP_001138943.1| PREDICTED: semaph ( 671) 1940 316.2 1.5e-83 gi|119589612|gb|EAW69206.1| sema domain, transmemb ( 682) 1892 308.7 2.9e-81 gi|119589613|gb|EAW69207.1| sema domain, transmemb ( 679) 1885 307.6 6.1e-81 gi|13259171|gb|AAK16831.1|AF293363_1 semaphorin 6B ( 687) 1821 297.5 6.6e-78 gi|114674749|ref|XP_001138863.1| PREDICTED: semaph ( 611) 1355 224.3 6.6e-56 gi|73987373|ref|XP_542153.2| PREDICTED: similar to ( 673) 1274 211.6 4.8e-52 gi|109126435|ref|XP_001112607.1| PREDICTED: simila ( 351) 1012 170.2 7.4e-40 gi|68393795|ref|XP_690876.1| PREDICTED: si:ch211-1 ( 564) 1012 170.4 1e-39 gi|189527331|ref|XP_001920254.1| PREDICTED: simila ( 848) 1012 170.5 1.4e-39 gi|73970505|ref|XP_859002.1| PREDICTED: similar to ( 975) 952 161.2 1e-36 gi|114601264|ref|XP_001150771.1| PREDICTED: simila ( 975) 947 160.4 1.8e-36 gi|119569319|gb|EAW48934.1| sema domain, transmemb ( 975) 947 160.4 1.8e-36 gi|38566246|gb|AAH62979.1| Sema6a protein [Mus mus ( 976) 941 159.4 3.5e-36 gi|189522381|ref|XP_687963.3| PREDICTED: similar t ( 615) 826 141.2 6.9e-31 gi|189522383|ref|XP_001920815.1| PREDICTED: simila ( 954) 826 141.4 9.4e-31 gi|149412934|ref|XP_001513097.1| PREDICTED: simila ( 932) 749 129.3 4e-27 gi|114656850|ref|XP_001164739.1| PREDICTED: semaph ( 997) 737 127.4 1.6e-26 gi|149064211|gb|EDM14414.1| sema domain, transmemb (1031) 737 127.4 1.6e-26 gi|26349885|dbj|BAC38582.1| unnamed protein produc ( 587) 732 126.4 1.9e-26 gi|26335301|dbj|BAC31351.1| unnamed protein produc ( 605) 732 126.4 1.9e-26 gi|109080999|ref|XP_001112417.1| PREDICTED: simila ( 998) 733 126.8 2.4e-26 gi|2623162|gb|AAB86408.1| semaphorin VIa [Mus musc ( 888) 732 126.6 2.5e-26 gi|126333778|ref|XP_001363795.1| PREDICTED: simila (1028) 732 126.6 2.8e-26 gi|56405301|sp|O35464.2|SEM6A_MOUSE Semaphorin-6A (1031) 732 126.6 2.8e-26 gi|114656848|ref|XP_001164888.1| PREDICTED: semaph ( 998) 727 125.8 4.6e-26 gi|21634821|gb|AAM69450.1|AF389427_1 semaphorin 6D ( 998) 726 125.7 5.2e-26 gi|73970497|ref|XP_858843.1| PREDICTED: similar to (1030) 726 125.7 5.3e-26 gi|73970501|ref|XP_858921.1| PREDICTED: similar to (1037) 726 125.7 5.3e-26 gi|73970499|ref|XP_858886.1| PREDICTED: similar to (1047) 726 125.7 5.4e-26 gi|73970507|ref|XP_538552.2| PREDICTED: similar to (1047) 726 125.7 5.4e-26 gi|73970503|ref|XP_858964.1| PREDICTED: similar to (1066) 726 125.7 5.4e-26 gi|119902568|ref|XP_001249926.1| PREDICTED: simila ( 998) 722 125.1 8e-26 gi|76622698|ref|XP_878303.1| PREDICTED: similar to (1029) 721 124.9 9.1e-26 gi|47215171|emb|CAG01437.1| unnamed protein produc ( 461) 710 122.8 1.7e-25 gi|73999990|ref|XP_861338.1| PREDICTED: similar to ( 998) 715 124.0 1.7e-25 gi|14042223|dbj|BAB55158.1| unnamed protein produc ( 699) 712 123.3 1.9e-25 gi|114601268|ref|XP_001150634.1| PREDICTED: sema d ( 869) 712 123.4 2.2e-25 gi|114601262|ref|XP_001150901.1| PREDICTED: sema d (1022) 712 123.5 2.4e-25 gi|189054769|dbj|BAG37591.1| unnamed protein produ (1030) 712 123.5 2.4e-25 >>gi|62088136|dbj|BAD92515.1| semaphorin 6B isoform 3 pr (518 aa) initn: 3610 init1: 3610 opt: 3610 Z-score: 3074.3 bits: 578.5 E(): 1.4e-162 Smith-Waterman score: 3610; 100.000% identity (100.000% similar) in 518 aa overlap (1-518:1-518) 10 20 30 40 50 60 fk0407 RPLPRAEVPRVHLDAGASSALPDDILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RPLPRAEVPRVHLDAGASSALPDDILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRV 10 20 30 40 50 60 70 80 90 100 110 120 fk0407 AVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AVDVGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPG 70 80 90 100 110 120 130 140 150 160 170 180 fk0407 GGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GGETGQRLLSLELDAASGGLLAAFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDG 130 140 150 160 170 180 190 200 210 220 230 240 fk0407 SCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SCIFLSPGTRAAFEQDVSGASTSGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVG 190 200 210 220 230 240 250 260 270 280 290 300 fk0407 AVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AVVSGFSVGWFVGLRERRELARRKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGG 250 260 270 280 290 300 310 320 330 340 350 360 fk0407 GGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GGAGVPPEALLAPLMQNGWAKATLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHAL 310 320 330 340 350 360 370 380 390 400 410 420 fk0407 GPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GPRAWDHGHPLLPASASSSLLLLAPARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLT 370 380 390 400 410 420 430 440 450 460 470 480 fk0407 PHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PHASPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFN 430 440 450 460 470 480 490 500 510 fk0407 SGEARPGDRHRGCHARPGTDLAHLLPYGGADRTAPPVP :::::::::::::::::::::::::::::::::::::: gi|620 SGEARPGDRHRGCHARPGTDLAHLLPYGGADRTAPPVP 490 500 510 >>gi|12081907|dbj|BAB20669.1| semaphorin Z [Homo sapiens (888 aa) initn: 3498 init1: 3498 opt: 3512 Z-score: 2988.1 bits: 563.3 E(): 8.5e-158 Smith-Waterman score: 3512; 96.571% identity (97.905% similar) in 525 aa overlap (2-518:364-888) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::::::: gi|120 SAVCAFDLTQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPD 340 350 360 370 380 390 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT 400 410 420 430 440 450 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAA 460 470 480 490 500 510 150 160 170 180 190 200 fk0407 FPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 FPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTS 520 530 540 550 560 570 210 220 230 240 250 260 fk0407 GLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 GLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARR 580 590 600 610 620 630 270 280 290 300 310 320 fk0407 KDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 KDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKAT 640 650 660 670 680 690 330 340 350 360 370 380 fk0407 LLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 LLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLL 700 710 720 730 740 750 390 400 410 420 430 440 fk0407 APARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 APARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASA 760 770 780 790 800 810 450 460 470 480 490 500 fk0407 ADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|120 ADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAH 820 830 840 850 860 870 510 fk0407 LLPYGGADRTAPPVP ::::::::::::::: gi|120 LLPYGGADRTAPPVP 880 >>gi|116242786|sp|Q9H3T3.4|SEM6B_HUMAN Semaphorin-6B pre (888 aa) initn: 3498 init1: 3498 opt: 3512 Z-score: 2988.1 bits: 563.3 E(): 8.5e-158 Smith-Waterman score: 3512; 96.571% identity (97.905% similar) in 525 aa overlap (2-518:364-888) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::::::: gi|116 SAVCAFDLTQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPD 340 350 360 370 380 390 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT 400 410 420 430 440 450 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAA 460 470 480 490 500 510 150 160 170 180 190 200 fk0407 FPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 FPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTS 520 530 540 550 560 570 210 220 230 240 250 260 fk0407 GLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 GLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARR 580 590 600 610 620 630 270 280 290 300 310 320 fk0407 KDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 KDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKAT 640 650 660 670 680 690 330 340 350 360 370 380 fk0407 LLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 LLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLL 700 710 720 730 740 750 390 400 410 420 430 440 fk0407 APARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 APARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASA 760 770 780 790 800 810 450 460 470 480 490 500 fk0407 ADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 ADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAH 820 830 840 850 860 870 510 fk0407 LLPYGGADRTAPPVP ::::::::::::::: gi|116 LLPYGGADRTAPPVP 880 >>gi|114674747|ref|XP_001139016.1| PREDICTED: semaphorin (877 aa) initn: 3476 init1: 3476 opt: 3490 Z-score: 2969.5 bits: 559.8 E(): 9.3e-157 Smith-Waterman score: 3490; 95.810% identity (97.714% similar) in 525 aa overlap (2-518:353-877) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::::::: gi|114 SAVCAFDLTQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPD 330 340 350 360 370 380 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|114 DILNFVKTHPLMDEAVPSLGHAPWIVRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT 390 400 410 420 430 440 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAA 450 460 470 480 490 500 150 160 170 180 190 200 fk0407 FPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTS 510 520 530 540 550 560 210 220 230 240 250 260 fk0407 GLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARR 570 580 590 600 610 620 270 280 290 300 310 320 fk0407 KDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKAT 630 640 650 660 670 680 330 340 350 360 370 380 fk0407 LLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLL 690 700 710 720 730 740 390 400 410 420 430 440 fk0407 APARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 APARAPEQPPAPGEPTPDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPASA 750 760 770 780 790 800 450 460 470 480 490 500 fk0407 ADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLAH ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::.::: gi|114 ADGLPRPWSPPPTGSLRRPPGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTELAH 810 820 830 840 850 860 510 fk0407 LLPYGGADRTAPPVP .:::::::::::::: gi|114 ILPYGGADRTAPPVP 870 >>gi|148691773|gb|EDL23720.1| sema domain, transmembrane (631 aa) initn: 2701 init1: 1291 opt: 2925 Z-score: 2491.6 bits: 470.9 E(): 3.8e-130 Smith-Waterman score: 2925; 82.732% identity (91.461% similar) in 527 aa overlap (2-518:110-631) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::::::: gi|148 SAVCAFDMNQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPD 80 90 100 110 120 130 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT .::::::::::::::::::::.:::.::::::::::::::::::::::::.::::::::: gi|148 EILNFVKTHPLMDEAVPSLGHSPWIVRTLMRHQLTRVAVDVGAGPWGNQTIVFLGSEAGT 140 150 160 170 180 190 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGG-GETGQRLLSLELDAASGGLLA ::::::.::::.:::.: :.::::::::::::::::.. :: :::::::::::::::::: gi|148 VLKFLVKPNASVSGTTGPSIFLEEFETYRPDRCGRPSSAGEWGQRLLSLELDAASGGLLA 200 210 220 230 240 250 150 160 170 180 190 200 fk0407 AFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGAST ::::::::::::::: ::::::::::::::::::::::::::: ::: :.:::::::::: gi|148 AFPRCVVRVPVARCQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPGTSATFEQDVSGAST 260 270 280 290 300 310 210 220 230 240 250 260 fk0407 SGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|148 SGLGDCTGLLRASLSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR 320 330 340 350 360 370 270 280 290 300 310 320 fk0407 RKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKA :::::::::::..:::::::::::::. :::::::.::: .: ::::::::::::::.:: gi|148 RKDKEAILAHGGSEAVLSVSRLGERRGTGPGGRGGAGGGPGG-PPEALLAPLMQNGWTKA 380 390 400 410 420 430 330 340 350 360 370 380 fk0407 TLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLL .::.:::::::.:::::::::::::::::::::: :::: :::::.: :: ::::.:::: gi|148 ALLHGGPHDLDTGLLPTPEQTPLPQKRLPTPHPHAHALGSRAWDHSHALLSASASTSLLL 440 450 460 470 480 490 390 400 410 420 430 440 fk0407 LAPARAPEQPPAPGEPTPDGRLYAARPGRASH-GDFPLTPHASPDRRRVVSAPTGPLDPA :::::: ::: .:.:: :..:: : : :::: :::::::::::::::::::::::::: gi|148 LAPARASEQPQVPAEPGPESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDP- 500 510 520 530 540 550 450 460 470 480 490 500 fk0407 SAADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDL :..:::: ::::: :.::::: :::.::.:.::::::::::::::: :: . .: .: gi|148 SVGDGLPGPWSPPATSSLRRP-GPHGPPTAALRRTHTFNSGEARPGG-HRP-RRHPPADS 560 570 580 590 600 610 510 fk0407 AHLLPYGGADRTAPPVP .:::: : ..::::::: gi|148 THLLPCGTGERTAPPVP 620 630 >>gi|74141579|dbj|BAE38558.1| unnamed protein product [M (886 aa) initn: 2701 init1: 1291 opt: 2925 Z-score: 2489.8 bits: 471.1 E(): 4.9e-130 Smith-Waterman score: 2925; 82.732% identity (91.461% similar) in 527 aa overlap (2-518:365-886) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::::::: gi|741 SAVCAFDMNQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPD 340 350 360 370 380 390 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT .::::::::::::::::::::.:::.::::::::::::::::::::::::.::::::::: gi|741 EILNFVKTHPLMDEAVPSLGHSPWIVRTLMRHQLTRVAVDVGAGPWGNQTIVFLGSEAGT 400 410 420 430 440 450 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGG-GETGQRLLSLELDAASGGLLA ::::::.::::.:::.: :.::::::::::::::::.. :: :::::::::::::::::: gi|741 VLKFLVKPNASVSGTTGPSIFLEEFETYRPDRCGRPSSAGEWGQRLLSLELDAASGGLLA 460 470 480 490 500 510 150 160 170 180 190 200 fk0407 AFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGAST ::::::::::::::: ::::::::::::::::::::::::::: ::: :.:::::::::: gi|741 AFPRCVVRVPVARCQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPGTSATFEQDVSGAST 520 530 540 550 560 570 210 220 230 240 250 260 fk0407 SGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|741 SGLGDCTGLLRASLSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR 580 590 600 610 620 630 270 280 290 300 310 320 fk0407 RKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKA :::::::::::..:::::::::::::. :::::::.::: .: ::::::::::::::.:: gi|741 RKDKEAILAHGGSEAVLSVSRLGERRGTGPGGRGGAGGGPGG-PPEALLAPLMQNGWTKA 640 650 660 670 680 690 330 340 350 360 370 380 fk0407 TLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLL .::.:::::::.:::::::::::::::::::::: :::: :::::.: :: ::::.:::: gi|741 ALLHGGPHDLDTGLLPTPEQTPLPQKRLPTPHPHAHALGSRAWDHSHALLSASASTSLLL 700 710 720 730 740 750 390 400 410 420 430 440 fk0407 LAPARAPEQPPAPGEPTPDGRLYAARPGRASH-GDFPLTPHASPDRRRVVSAPTGPLDPA :::::: ::: .:.:: :..:: : : :::: :::::::::::::::::::::::::: gi|741 LAPARASEQPQVPAEPGPESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDP- 760 770 780 790 800 810 450 460 470 480 490 500 fk0407 SAADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDL :..:::: ::::: :.::::: :::.::.:.::::::::::::::: :: . .: .: gi|741 SVGDGLPGPWSPPATSSLRRP-GPHGPPTAALRRTHTFNSGEARPGG-HRP-RRHPPADS 820 830 840 850 860 510 fk0407 AHLLPYGGADRTAPPVP .:::: : ..::::::: gi|741 THLLPCGTGERTAPPVP 870 880 >>gi|8134709|sp|O54951.1|SEM6B_MOUSE Semaphorin-6B precu (886 aa) initn: 2701 init1: 1291 opt: 2925 Z-score: 2489.8 bits: 471.1 E(): 4.9e-130 Smith-Waterman score: 2925; 82.732% identity (91.461% similar) in 527 aa overlap (2-518:365-886) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::::::: gi|813 SAVCAFDMNQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSALPD 340 350 360 370 380 390 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT .::::::::::::::::::::.:::.::::::::::::::::::::::::.::::::::: gi|813 EILNFVKTHPLMDEAVPSLGHSPWIVRTLMRHQLTRVAVDVGAGPWGNQTIVFLGSEAGT 400 410 420 430 440 450 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGG-GETGQRLLSLELDAASGGLLA ::::::.::::.:::.: :.::::::::::::::::.. :: :::::::::::::::::: gi|813 VLKFLVKPNASVSGTTGPSIFLEEFETYRPDRCGRPSSAGEWGQRLLSLELDAASGGLLA 460 470 480 490 500 510 150 160 170 180 190 200 fk0407 AFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGAST ::::::::::::::: ::::::::::::::::::::::::::: ::: :.:::::::::: gi|813 AFPRCVVRVPVARCQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPGTSATFEQDVSGAST 520 530 540 550 560 570 210 220 230 240 250 260 fk0407 SGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|813 SGLGDCTGLLRASLSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR 580 590 600 610 620 630 270 280 290 300 310 320 fk0407 RKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKA :::::::::::..:::::::::::::. :::::::.::: .: ::::::::::::::.:: gi|813 RKDKEAILAHGGSEAVLSVSRLGERRGTGPGGRGGAGGGPGG-PPEALLAPLMQNGWTKA 640 650 660 670 680 690 330 340 350 360 370 380 fk0407 TLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLL .::.:::::::.:::::::::::::::::::::: :::: :::::.: :: ::::.:::: gi|813 ALLHGGPHDLDTGLLPTPEQTPLPQKRLPTPHPHAHALGSRAWDHSHALLSASASTSLLL 700 710 720 730 740 750 390 400 410 420 430 440 fk0407 LAPARAPEQPPAPGEPTPDGRLYAARPGRASH-GDFPLTPHASPDRRRVVSAPTGPLDPA :::::: ::: .:.:: :..:: : : :::: :::::::::::::::::::::::::: gi|813 LAPARASEQPQVPAEPGPESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDP- 760 770 780 790 800 810 450 460 470 480 490 500 fk0407 SAADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDL :..:::: ::::: :.::::: :::.::.:.::::::::::::::: :: . .: .: gi|813 SVGDGLPGPWSPPATSSLRRP-GPHGPPTAALRRTHTFNSGEARPGG-HRP-RRHPPADS 820 830 840 850 860 510 fk0407 AHLLPYGGADRTAPPVP .:::: : ..::::::: gi|813 THLLPCGTGERTAPPVP 870 880 >>gi|8134705|sp|O70141.1|SEM6B_RAT Semaphorin-6B precurs (887 aa) initn: 1433 init1: 1355 opt: 2861 Z-score: 2435.4 bits: 461.0 E(): 5.2e-127 Smith-Waterman score: 2873; 81.404% identity (90.512% similar) in 527 aa overlap (2-518:365-887) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::.:::: gi|813 SAVCAFDMNQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASNALPD 340 350 360 370 380 390 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT .::::::::::::::::::::.:::.:::.::::::::::::::::::::.::::::.:: gi|813 EILNFVKTHPLMDEAVPSLGHSPWIVRTLIRHQLTRVAVDVGAGPWGNQTIVFLGSEVGT 400 410 420 430 440 450 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGG-GETGQRLLSLELDAASGGLLA ::::::.::::.:::.: :.::::::::::::::: .. :: :::::::::::::::::: gi|813 VLKFLVKPNASVSGTTGPSIFLEEFETYRPDRCGRSSSAGEWGQRLLSLELDAASGGLLA 460 470 480 490 500 510 150 160 170 180 190 200 fk0407 AFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGAST ::::::::::::::: ::::::::::::::::::::::::::: ::: :.:::::::::: gi|813 AFPRCVVRVPVARCQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPGTSATFEQDVSGAST 520 530 540 550 560 570 210 220 230 240 250 260 fk0407 SGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|813 SGLGDCTGLLRASLSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR 580 590 600 610 620 630 270 280 290 300 310 320 fk0407 RKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKA :::::::::::..:::::::::::::. : :::::.::: .: ::::::::::::::.:: gi|813 RKDKEAILAHGGSEAVLSVSRLGERRGTGTGGRGGAGGGPGG-PPEALLAPLMQNGWTKA 640 650 660 670 680 690 330 340 350 360 370 380 fk0407 TLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLL .::.:::::::::::::::::::::::::: ::: ::::::::::.: :: ::::.:::: gi|813 ALLHGGPHDLDSGLLPTPEQTPLPQKRLPTTHPHAHALGPRAWDHSHALLSASASTSLLL 700 710 720 730 740 750 390 400 410 420 430 440 fk0407 LAPARAPEQPPAPGEPTPDGRLYAARPGRASH-GDFPLTPHASPDRRRVVSAPTGPLDPA :: .:::::::.: : :..:: : : :::: ::::::::::::::::::::::::: . gi|813 LAHTRAPEQPPVPTESGPESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDSS 760 770 780 790 800 810 450 460 470 480 490 500 fk0407 SAADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDL :..: :: ::::: :.::::: :::.::.:.::::::::::::::: :: . :. : gi|813 SVGDDLPGPWSPPATSSLRRP-GPHGPPTAALRRTHTFNSGEARPGG-HRPRRHAPA-DS 820 830 840 850 860 870 510 fk0407 AHLLPYGGADRTAPPVP .:::: : ..::::::: gi|813 THLLPCGTGERTAPPVP 880 >>gi|149028217|gb|EDL83655.1| sema domain, transmembrane (931 aa) initn: 1433 init1: 1355 opt: 2861 Z-score: 2435.2 bits: 461.0 E(): 5.4e-127 Smith-Waterman score: 2873; 81.404% identity (90.512% similar) in 527 aa overlap (2-518:409-931) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::.:::: gi|149 SAVCAFDMNQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASNALPD 380 390 400 410 420 430 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT .::::::::::::::::::::.:::.:::.::::::::::::::::::::.::::::.:: gi|149 EILNFVKTHPLMDEAVPSLGHSPWIVRTLIRHQLTRVAVDVGAGPWGNQTIVFLGSEVGT 440 450 460 470 480 490 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGG-GETGQRLLSLELDAASGGLLA ::::::.::::.:::.: :.::::::::::::::: .. :: :::::::::::::::::: gi|149 VLKFLVKPNASVSGTTGPSIFLEEFETYRPDRCGRSSSAGEWGQRLLSLELDAASGGLLA 500 510 520 530 540 550 150 160 170 180 190 200 fk0407 AFPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGAST ::::::::::::::: ::::::::::::::::::::::::::: ::: :.:::::::::: gi|149 AFPRCVVRVPVARCQLYSGCMKNCIGSQDPYCGWAPDGSCIFLRPGTSATFEQDVSGAST 560 570 580 590 600 610 210 220 230 240 250 260 fk0407 SGLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|149 SGLGDCTGLLRASLSDDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELAR 620 630 640 650 660 670 270 280 290 300 310 320 fk0407 RKDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKA :::::::::::..:::::::::::::. : :::::.::: .: ::::::::::::::.:: gi|149 RKDKEAILAHGGSEAVLSVSRLGERRGTGTGGRGGAGGGPGG-PPEALLAPLMQNGWTKA 680 690 700 710 720 730 330 340 350 360 370 380 fk0407 TLLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLL .::.:::::::::::::::::::::::::: ::: ::::::::::.: :: ::::.:::: gi|149 ALLHGGPHDLDSGLLPTPEQTPLPQKRLPTTHPHAHALGPRAWDHSHALLSASASTSLLL 740 750 760 770 780 790 390 400 410 420 430 440 fk0407 LAPARAPEQPPAPGEPTPDGRLYAARPGRASH-GDFPLTPHASPDRRRVVSAPTGPLDPA :: .:::::::.: : :..:: : : :::: ::::::::::::::::::::::::: . gi|149 LAHTRAPEQPPVPTESGPESRLCAPRSCRASHPGDFPLTPHASPDRRRVVSAPTGPLDSS 800 810 820 830 840 850 450 460 470 480 490 500 fk0407 SAADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDL :..: :: ::::: :.::::: :::.::.:.::::::::::::::: :: . :. : gi|149 SVGDDLPGPWSPPATSSLRRP-GPHGPPTAALRRTHTFNSGEARPGG-HRPRRHAPA-DS 860 870 880 890 900 910 510 fk0407 AHLLPYGGADRTAPPVP .:::: : ..::::::: gi|149 THLLPCGTGERTAPPVP 920 930 >>gi|119929270|ref|XP_605966.3| PREDICTED: similar to Se (845 aa) initn: 2411 init1: 2190 opt: 2571 Z-score: 2189.5 bits: 415.4 E(): 2.6e-113 Smith-Waterman score: 2571; 87.126% identity (93.793% similar) in 435 aa overlap (2-427:364-796) 10 20 fk0407 RPLPRAEVPRVH--------LDAGASSALPD :.:. .::: . .. .::::.:: gi|119 SAVCAFDMTQVAAVFEGRFREQKSPESIWTPVPEDQVPRPRPGCCAAPGMQYNASSAFPD 340 350 360 370 380 390 30 40 50 60 70 80 fk0407 DILNFVKTHPLMDEAVPSLGHAPWILRTLMRHQLTRVAVDVGAGPWGNQTVVFLGSEAGT .::::::::::::::::::::::::.:::::::::::::::::::::::::.:::::::: gi|119 EILNFVKTHPLMDEAVPSLGHAPWIVRTLMRHQLTRVAVDVGAGPWGNQTVIFLGSEAGT 400 410 420 430 440 450 90 100 110 120 130 140 fk0407 VLKFLVRPNASTSGTSGLSVFLEEFETYRPDRCGRPGGGETGQRLLSLELDAASGGLLAA :::::: ::::.:::.: ::::::::::::::::: : :::::::::::::::::::::: gi|119 VLKFLVWPNASASGTTGPSVFLEEFETYRPDRCGRSGDGETGQRLLSLELDAASGGLLAA 460 470 480 490 500 510 150 160 170 180 190 200 fk0407 FPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCIFLSPGTRAAFEQDVSGASTS :::::::::::::::::::::::::::::::::::::::.::::::::.:::::::.::: gi|119 FPRCVVRVPVARCQQYSGCMKNCIGSQDPYCGWAPDGSCVFLSPGTRATFEQDVSGTSTS 520 530 540 550 560 570 210 220 230 240 250 260 fk0407 GLGDCTGLLRASLSEDRAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWFVGLRERRELARR :::::::::::::::.:::::::::::::::::::::::::::::::.:::::::::::: gi|119 GLGDCTGLLRASLSEERAGLVSVNLLVTSSVAAFVVGAVVSGFSVGWYVGLRERRELARR 580 590 600 610 620 630 270 280 290 300 310 320 fk0407 KDKEAILAHGAGEAVLSVSRLGERRAQGPGGRGGGGGGGAGVPPEALLAPLMQNGWAKAT ::::::::::.::::::::::::::: :::::.:::::: : ::::::::::::::.::: gi|119 KDKEAILAHGGGEAVLSVSRLGERRAGGPGGRAGGGGGGPGGPPEALLAPLMQNGWTKAT 640 650 660 670 680 690 330 340 350 360 370 380 fk0407 LLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHPHPHALGPRAWDHGHPLLPASASSSLLLL :::::::::::::::::::::::::::::::: :.::::::.:: :: :::::::::: gi|119 LLQGGPHDLDSGLLPTPEQTPLPQKRLPTPHP--HTLGPRAWEHGPALLTASASSSLLLL 700 710 720 730 740 750 390 400 410 420 430 440 fk0407 APARAPEQPPAPGEPT-PDGRLYAARPGRASHGDFPLTPHASPDRRRVVSAPTGPLDPAS ::.:::: :::::::. ::.::..:::::::::::::::::. : gi|119 APGRAPEPPPAPGEPAAPDARLFTARPGRASHGDFPLTPHAAAPRLGGASHGNQEREPGA 760 770 780 790 800 810 450 460 470 480 490 500 fk0407 AADGLPRPWSPPPTGSLRRPLGPHAPPAATLRRTHTFNSGEARPGDRHRGCHARPGTDLA gi|119 SSQVCVVCSLHPRMADPGSDTCTFNYRRKESGRI 820 830 840 518 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 01:31:42 2008 done: Mon Aug 11 01:34:00 2008 Total Scan time: 904.010 Total Display time: 0.200 Function used was FASTA [version 34.26.5 April 26, 2007]