hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-01340118/chunk_1/iprscan-20080811-01340118.nocrc
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Query sequence: fk04076
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01403.10.fs Sema domain                                     61.0      7e-17   1
PF01437.15.fs Plexin repeat                                   35.5      5e-11   1
PF01437.15.ls Plexin repeat                                   37.3      5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01403.10.fs   1/1      15   119 ..   369   480 ..    61.0    7e-17
PF01437.15.fs   1/1     155   205 ..     1    63 []    35.5    5e-11
PF01437.15.ls   1/1     155   205 ..     1    63 []    37.3    5e-08

Alignments of top-scoring domains:
PF01403.10.fs: domain 1 of 1, from 15 to 119: score 61.0, E = 7e-17
                   *->pndssgpnytStkdlPDdtlnfikshpLmdevvpPlhnrPlfvgtsv
                      +++ss         lPDd lnf+k+hpLmde+vp+l  +P+  +t+ 
     fk04076    15    AGASS--------ALPDDILNFVKTHPLMDEAVPSLGHAPWILRTLM 53   

                   nyrlTqIaVdkrVragdGqlYtVlFlGTddGtvlKkvvvlsrsss..sye
                   + +lT +aVd  V ag   + tV+FlG + GtvlK++v+   s s++s +
     fk04076    54 RHQLTRVAVD--VGAGPWGNQTVVFLGSEAGTVLKFLVRPNASTSgtSGL 101  

                   evvleelqvfkdpri.eP<-*
                   +v+lee + +++ r++ P   
     fk04076   102 SVFLEEFETYRPDRCgRP    119  

PF01437.15.fs: domain 1 of 1, from 155 to 205: score 35.5, E = 5e-11
                   *->nCsqytsC.ssCLaardpfyCgWCssegrCtrgsaytsfygeCprse
                      +C+qy+ C   C++++dp yCgW ++ g+C+ +s         +r++
     fk04076   155    RCQQYSGCmKNCIGSQDP-YCGWAPD-GSCIFLS-------PGTRAA 192  

                   pendqwldwswssskCp<-*
                         +d s +s       
     fk04076   193 ----FEQDVSGASTSGL    205  

PF01437.15.ls: domain 1 of 1, from 155 to 205: score 37.3, E = 5e-08
                   *->nCsqytsC.ssCLaardpfyCgWCssegrCtrgsaytsfygeCprse
                      +C+qy+ C   C++++dp yCgW ++ g+C+ +s         +r++
     fk04076   155    RCQQYSGCmKNCIGSQDP-YCGWAPD-GSCIFLS-------PGTRAA 192  

                   pendqwldwswssskCp<-*
                         +d s +s       
     fk04076   193 ----FEQDVSGASTSGL    205  

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