hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-01582721/chunk_1/iprscan-20080811-01582721.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk04248 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 62.9 2.1e-20 2 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase -3.0 2.5e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00443.19.fs 1/2 28 405 .. 158 288 .. 31.4 2.4e-10 PF00443.19.ls 1/1 192 583 .. 1 318 [] -3.0 2.5e-06 PF00443.19.fs 2/2 534 583 .. 278 318 .] 31.5 2.3e-10 Alignments of top-scoring domains: PF00443.19.fs: domain 1 of 2, from 28 to 405: score 31.4, E = 2.4e-10 RF xxxxx *->Gqlks.......................................... G+ +++ ++ ++++++ ++ ++ + ++ +++++ +++ +++++++++ fk04248 28 GRITTkveeiphpkeemnginsiemdsmrhsedfkeklpkgngkrks 74 RF .................................................. +++ ++ +++ + ++++++ ++++++++++++ ++++ +++++ ++ + fk04248 75 dtefgnmkkkvklskehqsleenqrqtrskrkatsdtlesppkiipkyis 124 RF .................................................. +++++++++++++ + + ++ +++++ ++ ++ ++ +++++ ++++++ fk04248 125 enesprpsqkksrvkinwlksatkqpsilskfcslgkittnqgvkgqske 174 RF .................................................. ++++++++ +++++++++++++ ++++++ ++ + ++ ++ ++++++ + fk04248 175 necdpeedlgkcesdnttngcglespgntvtpvnvnevkpinkgeeqigf 224 RF .................................................. + ++ +++ ++++ ++++ ++++++ ++ + + ++++ ++ +++++ fk04248 225 elveklfqgqlvlrtrcleceslterredfqdisvpvqedelskveesse 274 RF xxxxxx ............................................klkikr +++++++ ++ + ++ + ++ ++++ ++++++ ++ +++l +++ fk04248 275 ispepktemktlrwaisqfasverivgedkyfcenchhyteaerSLLFDK 324 RF xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxx LPpvLiihLKRFsynget.....glnkKiddkVefPleLdlssycnaelk P+v +ihLK F +g + +g +Ki++++ Pl L l ++ + +++ fk04248 325 MPEVITIHLKCFAASGLEfdcygGGLSKINTPLLTPLKLSLEEWSTKPTN 374 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ekevlrkdekieklkeerqrdedgnneeepeeeedneegenpptkYeLya + Y L+a fk04248 375 D-------------------------------------------SYGLFA 381 RF xxxxxxxxxxxxxxxxxxxxxxxxx VvvHsGsslssGHYiayikkkkeng<-* Vv HsG + ssGHY+a +k + + + fk04248 382 VVMHSGITISSGHYTASVK-VTDLN 405 PF00443.19.ls: domain 1 of 1, from 192 to 583: score -3.0, E = 2.5e-06 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl + +GL+ GNT ++ ++ ++ fk04248 192 TNGCGLESPGNT----------------VTPVNVNE----------- 211 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++ +k ++ + fk04248 212 -----------------VKPiNKGEEQIG--------------------- 223 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt ++ ++ fk04248 224 ------------FELVE--------------------------------- 228 RF xxxxxxxxxxxxxxxx rnesiitdlFqGqlks.................................. +lFqGql ++++ ++++ ++++++ ++ + + ++++ ++ ++ fk04248 229 -------KLFQGQLVLrtrcleceslterredfqdisvpvqedelskvee 271 RF xxx ...............................................klk +++ +++++++ ++ + ++ + ++ ++++ ++++++ ++ +++l fk04248 272 sseispepktemktlrwaisqfasverivgedkyfcenchhyteaerSLL 321 RF xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx ikrLPpvLiihLKRFsynget.....glnkKiddkVefPleLdlssycna +++ P+v +ihLK F +g + +g +Ki++++ Pl L l ++ + fk04248 322 FDKMPEVITIHLKCFAASGLEfdcygGGLSKINTPLLTPLKLSLEEWSTK 371 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx elkekevlrkdekieklkeerqrdedgnneeepeeeedneegenpptkYe ++++ Y fk04248 372 PTND-------------------------------------------SYG 378 RF xxxxxxxxxxxxxxxxxxxxxxx LyaVvvHsGsslssGHYiayikk........................... L+aVv HsG + ssGHY+a +k ++ ++ + ++++ ++ + +++++ fk04248 379 LFAVVMHSGITISSGHYTASVKVtdlnsleldkgnfvvdqmceigkpepl 428 RF .................................................. ++++ ++ ++ ++++ + + ++++++++ ++++ + + ++++++ + fk04248 429 neeeargvvenyndeevsirvggntqpskvlnkknveaigllggqkskad 478 RF .................................................. + ++ +++++ ++ +++++++++++++++++++++++++++ + + fk04248 479 yelynkasnpdkvastafaenrnsetsdttgthesdrnkessdqtginis 528 RF xxxxxxxxxxxxxxxxxxxxxxxxx xxxxx .............kkengkWykfDDekVsevteeevle.......rsssA + +++ + ++ k ++gkW++fDD+ V++ +e + l++ +++++ +s++ fk04248 529 gfenkisyvvqslKEYEGKWLLFDDSEVKVTEEKDFLNslspstsPTSTP 578 RF xxxxx YiLFY<-* Y+LFY fk04248 579 YLLFY 583 PF00443.19.fs: domain 2 of 2, from 534 to 583: score 31.5, E = 2.3e-10 RF xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxx *->iayikk..kkengkWykfDDekVsevteeevle.......rsssAYi i+y+ ++ k ++gkW++fDD+ V++ +e + l++ +++++ +s++Y+ fk04248 534 ISYVVQslKEYEGKWLLFDDSEVKVTEEKDFLNslspstsPTSTPYL 580 RF xxx LFY<-* LFY fk04248 581 LFY 583 //