hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-02101139/chunk_1/iprscan-20080811-02101139.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk04467 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00176.13.ls SNF2 family N-terminal domain 534.9 8e-158 1 PF00176.13.fs SNF2 family N-terminal domain 533.1 2.8e-157 1 PF09111.1.fs SLIDE 246.0 7.1e-73 1 PF09111.1.ls SLIDE 248.0 1.8e-71 1 PF09110.1.fs HAND 164.7 1.4e-55 1 PF09110.1.ls HAND 166.4 6.8e-47 1 PF00271.21.fs Helicase conserved C-terminal domain 98.1 4.9e-28 1 PF00271.21.ls Helicase conserved C-terminal domain 100.1 6.1e-27 1 PF00249.21.fs Myb-like DNA-binding domain 21.1 7.4e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00176.13.fs 1/1 188 468 .. 1 355 [] 533.1 2.8e-157 PF00176.13.ls 1/1 188 468 .. 1 355 [] 534.9 8e-158 PF00271.21.fs 1/1 523 602 .. 1 76 [] 98.1 4.9e-28 PF00271.21.ls 1/1 523 602 .. 1 76 [] 100.1 6.1e-27 PF09110.1.fs 1/1 748 846 .. 1 133 [] 164.7 1.4e-55 PF09110.1.ls 1/1 748 846 .. 1 133 [] 166.4 6.8e-47 PF00249.21.fs 1/2 847 888 .. 1 60 [. 14.2 0.0056 PF09111.1.fs 1/1 902 1018 .. 1 119 [] 246.0 7.1e-73 PF09111.1.ls 1/1 902 1018 .. 1 119 [] 248.0 1.8e-71 Alignments of top-scoring domains: PF00176.13.fs: domain 1 of 1, from 188 to 468: score 533.1, E = 2.8e-157 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQ++G+nWLisly+n g++gILADEMGLGKTlQtIsll+y fk04467 188 YQVRGLNWLISLYEN--------GINGILADEMGLGKTLQTISLLGY 226 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns +k++++++ gp++v +P+Stl+nW++Ef++w+p +l+ v+++gd+++ fk04467 227 MKHYRNIP----GPHMVLVPKSTLHNWMSEFKRWVP-TLRSVCLIGDKEQ 271 rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin r ++++r+vl++g ++dv++tsYe+++k +k+++kk +n fk04467 272 R-----AAFVRDVLLPG---EWDVCVTSYEMLIK-----EKSVFKK--FN 306 wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl wry+++DE+ HriKNe+Skl s+ ++++k ++nRLlLTGTPlQNnL+El fk04467 307 WRYLVIDEA-HRIKNEKSKL--SEIVREFK-TTNRLLLTGTPLQNNLHEL 352 wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr wsLlnFl+P++F+s+ ++Fd wf++ ++ g+ fk04467 353 WSLLNFLLPDVFNSA-------DDFDSWFDTNNCLGDQ------------ 383 ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels kl++rLh +l+pflLRR+K+dveksLpp K+e +++++ls fk04467 384 ---------KLVERLHMVLRPFLLRRIKADVEKSLPP--KKEVKIYVGLS 422 klQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrKi k+Q+e+Y+++l +kd++++n+ gk+ k+rlln++mqLrK+ fk04467 423 KMQREWYTRIL---MKDIDILNS-----AGKM---DKMRLLNILMQLRKC 461 cNfHPyLf<-* cN HPyLf fk04467 462 CN-HPYLF 468 PF00176.13.ls: domain 1 of 1, from 188 to 468: score 534.9, E = 8e-158 *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay YQ++G+nWLisly+n g++gILADEMGLGKTlQtIsll+y fk04467 188 YQVRGLNWLISLYEN--------GINGILADEMGLGKTLQTISLLGY 226 lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns +k++++++ gp++v +P+Stl+nW++Ef++w+p +l+ v+++gd+++ fk04467 227 MKHYRNIP----GPHMVLVPKSTLHNWMSEFKRWVP-TLRSVCLIGDKEQ 271 rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin r ++++r+vl++g ++dv++tsYe+++k +k+++kk +n fk04467 272 R-----AAFVRDVLLPG---EWDVCVTSYEMLIK-----EKSVFKK--FN 306 wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl wry+++DE+ HriKNe+Skl s+ ++++k ++nRLlLTGTPlQNnL+El fk04467 307 WRYLVIDEA-HRIKNEKSKL--SEIVREFK-TTNRLLLTGTPLQNNLHEL 352 wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr wsLlnFl+P++F+s+ ++Fd wf++ ++ g+ fk04467 353 WSLLNFLLPDVFNSA-------DDFDSWFDTNNCLGDQ------------ 383 ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels kl++rLh +l+pflLRR+K+dveksLpp K+e +++++ls fk04467 384 ---------KLVERLHMVLRPFLLRRIKADVEKSLPP--KKEVKIYVGLS 422 klQkelYkkflkeeskdvkaindserreggkeknegksrllnlimqLrKi k+Q+e+Y+++l +kd++++n+ gk+ k+rlln++mqLrK+ fk04467 423 KMQREWYTRIL---MKDIDILNS-----AGKM---DKMRLLNILMQLRKC 461 cNfHPyLf<-* cN HPyLf fk04467 462 CN-HPYLF 468 PF00271.21.fs: domain 1 of 1, from 523 to 602: score 98.1, E = 4.9e-28 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr ++ ++++++rl+G+++ +eR++ +++ ++ +s++ +++++T+++g+ fk04467 523 YCmWRNYEYCRLDGQTPHDERQDSINAYNEPNStkfVFMLSTRAGGL 569 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi++ +++VI+yd++wnp++++Q+++Ra+R+G fk04467 570 GINLATADVVILYDSDWNPQVDLQAMDRAHRIG 602 PF00271.21.ls: domain 1 of 1, from 523 to 602: score 100.1, E = 6.1e-27 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr ++ ++++++rl+G+++ +eR++ +++ ++ +s++ +++++T+++g+ fk04467 523 YCmWRNYEYCRLDGQTPHDERQDSINAYNEPNStkfVFMLSTRAGGL 569 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi++ +++VI+yd++wnp++++Q+++Ra+R+G fk04467 570 GINLATADVVILYDSDWNPQVDLQAMDRAHRIG 602 PF09110.1.fs: domain 1 of 1, from 748 to 846: score 164.7, E = 1.4e-55 *->SVDnYYKDvLgtGgrtgskknpkqPKaPRaPKqvnvqDhQFfPprLk +VD+Y++++L r++ + pk+PKaPR+PKq+nvqD+QFfPprL+ fk04467 748 AVDAYFREAL----RVS--E-PKAPKAPRPPKQPNVQDFQFFPPRLF 787 eLqEKEqlyYrKkIgYKVpldDvtedeeEfleeeedEeeereeseddteq eL+EKE+l+YrK+IgYKVp + ++ + +++e fk04467 788 ELLEKEILFYRKTIGYKVPRNPEL-PNA----AQ----AQKE-------- 820 KeddiaKrelEQekIDNAePLTEEEeeeKeelleEG<-* EQ kID+Ae L +EE+eeKe+ll++G fk04467 821 ----------EQLKIDEAESLNDEELEEKEKLLTQG 846 PF09110.1.ls: domain 1 of 1, from 748 to 846: score 166.4, E = 6.8e-47 *->SVDnYYKDvLgtGgrtgskknpkqPKaPRaPKqvnvqDhQFfPprLk +VD+Y++++L r++ + pk+PKaPR+PKq+nvqD+QFfPprL+ fk04467 748 AVDAYFREAL----RVS--E-PKAPKAPRPPKQPNVQDFQFFPPRLF 787 eLqEKEqlyYrKkIgYKVpldDvtedeeEfleeeedEeeereeseddteq eL+EKE+l+YrK+IgYKVp + ++ + +++e fk04467 788 ELLEKEILFYRKTIGYKVPRNPEL-PNA----AQ----AQKE-------- 820 KeddiaKrelEQekIDNAePLTEEEeeeKeelleEG<-* EQ kID+Ae L +EE+eeKe+ll++G fk04467 821 ----------EQLKIDEAESLNDEELEEKEKLLTQG 846 PF00249.21.fs: domain 1 of 2, from 847 to 888: score 14.2, E = 0.0056 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +W++ + +++++a ek+G + + + Ia++++ fk04467 847 FTNWNKRDFNQFIKANEKWGRD----------DIENIAREVE----- 878 nvlgrtaeqcklr<-* g+t+e+++++ fk04467 879 ---GKTPEEVIEY 888 PF09111.1.fs: domain 1 of 1, from 902 to 1018: score 246.0, E = 7.1e-73 *->yeKyikrIErGEeKikklkeqqklLrrKleqyrnPlqeLkiqYppnt eK++++IErGE++i+++ ++k+L+ K+ +y++P+++L+i Y++n fk04467 902 IEKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTN- 947 NkkrtYseeEDRFLLvmlykyGldseglyEkIrdeIresPlFrFDWFfkS k+++Y+eeEDRFL++ml+k+G+d+e++y+++r+ Ir+sP+FrFDWF+kS fk04467 948 -KGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKS 996 RTpqELsRRvnTLltlieKEfe<-* RT++EL+RR+nTL+tlie+E+ fk04467 997 RTAMELQRRCNTLITLIERENM 1018 PF09111.1.ls: domain 1 of 1, from 902 to 1018: score 248.0, E = 1.8e-71 *->yeKyikrIErGEeKikklkeqqklLrrKleqyrnPlqeLkiqYppnt eK++++IErGE++i+++ ++k+L+ K+ +y++P+++L+i Y++n fk04467 902 IEKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTN- 947 NkkrtYseeEDRFLLvmlykyGldseglyEkIrdeIresPlFrFDWFfkS k+++Y+eeEDRFL++ml+k+G+d+e++y+++r+ Ir+sP+FrFDWF+kS fk04467 948 -KGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKS 996 RTpqELsRRvnTLltlieKEfe<-* RT++EL+RR+nTL+tlie+E+ fk04467 997 RTAMELQRRCNTLITLIERENM 1018 //