hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-02101139/chunk_1/iprscan-20080811-02101139.nocrc
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Query sequence: fk04467
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 160.2    2.1e-43   1
SM00490                                                 100.7    1.7e-25   1
SM00717                                                  64.4    1.4e-14   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     181   373 ..     1   219 []   160.2  2.1e-43
SM00490      1/1     518   602 ..     1    86 []   100.7  1.7e-25
SM00717      1/2     846   895 ..     1    53 []    32.4  6.2e-05
SM00717      2/2     948  1012 ..     1    53 []    32.0    8e-05

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 181 to 373: score 160.2, E = 2.1e-43
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      +++klr+yQ ++++wl++  +++ ++ila+++G+GKTl ++++ll +
     fk04467   181    KWgKLRDYQVRGLNWLISLyengINGILADEMGLGKTL-QTISLLGY 226  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                    k++++        +++ vlvP ++  ++w++e+k++ p         l+
     fk04467   227 MKHYRN------IPGPHMVLVP-KSTLHNWMSEFKRWVPT--------LR 261  

                   vvglygGsktkekeqlrklksgkt.....dilvtTpgrLldll.ngkgls
                   +v+l+g+     keq++++ +++  +++ d+ vt++++L+++ +    ++
     fk04467   262 SVCLIGD-----KEQRAAFVRDVLlpgewDVCVTSYEMLIKEKsV---FK 303  

                   l.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATp
                   + n++++++DEaHr++        + +++l ++++++ k+ +rlll++Tp
     fk04467   304 KfNWRYLVIDEAHRIK--------NEKSKLSeIVREF-KTTNRLLLTGTP 344  

                   peienllklflnlpelfpnpvfisvgf..tlepieqf<-*
                     ++n+l+++++      ++ f+ ++  ++ ++++ +   
     fk04467   345 --LQNNLHELWS------LLNFLLPDVfnSADDFDSW    373  

SM00490: domain 1 of 1, from 518 to 602: score 100.7, E = 1.7e-25
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv
                      d+l++++ ++    +++++rl+G+++ +eR++ +++ ++ ++++ ++
     fk04467   518    DILEDYCMWR----NYEYCRLDGQTPHDERQDSINAYNEPNStkfVF 560  

                   LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   +++T+++++G+++  +d+VI yd +w+p+ ++Q+++Ra+R+G   
     fk04467   561 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG    602  

SM00717: domain 1 of 2, from 846 to 895: score 32.4, E = 6.2e-05
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                        ++W++ + +++++a +k+G+   +d ++Ia+e+ g+tp++++e+ 
     fk04467   846    GFTNWNKRDFNQFIKANEKWGR---DDIENIAREVEGKTPEEVIEYS 889  

                   rnllkp<-*
                     ++++   
     fk04467   890 AVFWER    895  

SM00717: domain 2 of 2, from 948 to 1012: score 32.0, E = 8e-05
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelp...........
                      k++++teeEd+ L+++++k+G+++ n +++  +++ ++++ + +   
     fk04467   948    KGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRnspqfrfdwfl 994  

                   .gRtpkqcrerwrnllkp<-*
                   ++Rt+ ++++r+++l+     
     fk04467   995 kSRTAMELQRRCNTLITL    1012 

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