# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk04706.fasta.nr -Q fk04706.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk04706, 134 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842864 sequences Expectation_n fit: rho(ln(x))= 4.9832+/-0.000182; mu= 6.7410+/- 0.010 mean_var=67.6343+/-13.343, 0's: 40 Z-trim: 41 B-trim: 2086 in 1/66 Lambda= 0.155952 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088144|dbj|BAD92519.1| stathmin 1 variant [Ho ( 134) 855 200.3 6.1e-50 gi|108999807|ref|XP_001114361.1| PREDICTED: simila ( 408) 532 128.0 1.1e-27 gi|122890670|emb|CAM12864.1| stathmin 1/oncoprotei ( 86) 397 97.1 4.5e-19 gi|149024226|gb|EDL80723.1| rCG31023, isoform CRA_ ( 115) 397 97.2 5.7e-19 gi|122890671|emb|CAM12865.1| stathmin 1/oncoprotei ( 116) 397 97.2 5.7e-19 gi|134974|sp|P13668.2|STMN1_RAT Stathmin (Phosphop ( 149) 397 97.3 6.9e-19 gi|134973|sp|P16949.3|STMN1_HUMAN Stathmin (Phosph ( 149) 397 97.3 6.9e-19 gi|148698063|gb|EDL30010.1| mCG12955, isoform CRA_ ( 115) 393 96.3 1.1e-18 gi|126328591|ref|XP_001363136.1| PREDICTED: simila ( 149) 393 96.4 1.3e-18 gi|148699125|gb|EDL31072.1| mCG7351 [Mus musculus] ( 149) 393 96.4 1.3e-18 gi|15680064|gb|AAH14353.1| Stathmin 1/oncoprotein ( 149) 393 96.4 1.3e-18 gi|1711560|sp|P54227.2|STMN1_MOUSE Stathmin (Phosp ( 149) 393 96.4 1.3e-18 gi|60654325|gb|AAX29853.1| stathmin 1/oncoprotein ( 150) 393 96.4 1.3e-18 gi|62901936|gb|AAY18919.1| leukemia-associated pho ( 173) 390 95.8 2.3e-18 gi|26353666|dbj|BAC40463.1| unnamed protein produc ( 149) 387 95.1 3.3e-18 gi|12850583|dbj|BAB28778.1| unnamed protein produc ( 149) 386 94.8 3.9e-18 gi|12832714|dbj|BAB22225.1| unnamed protein produc ( 149) 385 94.6 4.5e-18 gi|14625464|dbj|BAB61894.1| stathmin [Mus musculus ( 149) 384 94.4 5.3e-18 gi|149641974|ref|XP_001514288.1| PREDICTED: simila ( 149) 383 94.2 6.2e-18 gi|401134|sp|P31395|STMN1_CHICK Stathmin gi|63 ( 148) 380 93.5 9.8e-18 gi|63797|emb|CAA46450.1| stathmin [Gallus gallus] ( 161) 380 93.5 1e-17 gi|12851772|dbj|BAB29161.1| unnamed protein produc ( 149) 374 92.1 2.5e-17 gi|58568661|gb|AAW78997.1| GekBS151P [Gekko japoni ( 127) 369 91.0 4.8e-17 gi|7960150|gb|AAF71237.1| leukemia-associated phos ( 111) 353 87.3 5.3e-16 gi|76613719|ref|XP_589478.2| PREDICTED: similar to ( 141) 348 86.3 1.4e-15 gi|27688981|ref|XP_220874.1| PREDICTED: similar to ( 151) 328 81.8 3.3e-14 gi|183213083|gb|ACC55204.1| stathmin 1/oncoprotein ( 145) 302 75.9 1.8e-12 gi|32450058|gb|AAH54159.1| Stmn1-prov protein [Xen ( 145) 300 75.5 2.5e-12 gi|586046|sp|Q09006|STM1A_XENLA Stathmin-1-A (Stat ( 145) 297 74.8 4e-12 gi|62202144|gb|AAH92763.1| Zgc:110159 [Danio rerio ( 149) 296 74.6 4.8e-12 gi|62079632|gb|AAX61162.1| stathmin [Oreochromis m ( 109) 294 74.0 5.2e-12 gi|51513442|gb|AAH80482.1| Stathmin 1/oncoprotein ( 145) 295 74.4 5.5e-12 gi|55846718|gb|AAV67363.1| stathmin 1 [Macaca fasc ( 125) 289 73.0 1.3e-11 gi|92096555|gb|AAI15339.1| Stathmin 1a [Danio reri ( 148) 287 72.6 1.9e-11 gi|47206065|emb|CAG04189.1| unnamed protein produc ( 144) 279 70.8 6.6e-11 gi|55846830|gb|AAV67419.1| stathmin-like 2 protein ( 162) 266 67.9 5.5e-10 gi|109086764|ref|XP_001088978.1| PREDICTED: simila ( 168) 266 67.9 5.7e-10 gi|109086762|ref|XP_001089549.1| PREDICTED: simila ( 174) 266 67.9 5.8e-10 gi|109086760|ref|XP_001089436.1| PREDICTED: simila ( 174) 266 67.9 5.8e-10 gi|2605600|dbj|BAA23326.1| silencer element [Homo ( 179) 266 67.9 6e-10 gi|2500900|sp|P55821.1|STMN2_MOUSE Stathmin-2 (Sup ( 179) 266 67.9 6e-10 gi|119607470|gb|EAW87064.1| stathmin-like 2, isofo ( 187) 266 67.9 6.2e-10 gi|73999286|ref|XP_850147.1| PREDICTED: similar to ( 209) 266 67.9 6.7e-10 gi|12850126|dbj|BAB28602.1| unnamed protein produc ( 209) 266 67.9 6.7e-10 gi|126321246|ref|XP_001377517.1| PREDICTED: simila ( 255) 265 67.8 9.2e-10 gi|149489036|ref|XP_001507505.1| PREDICTED: simila ( 326) 265 67.9 1.1e-09 gi|194214819|ref|XP_001490341.2| PREDICTED: simila ( 179) 262 67.0 1.1e-09 gi|6225780|sp|O93388|STMN3_CHICK Stathmin-3 (SCG10 ( 180) 261 66.8 1.3e-09 gi|49522948|gb|AAH75248.1| MGC84472 protein [Xenop ( 178) 260 66.5 1.5e-09 gi|114620574|ref|XP_001167123.1| PREDICTED: simila ( 180) 260 66.5 1.5e-09 >>gi|62088144|dbj|BAD92519.1| stathmin 1 variant [Homo s (134 aa) initn: 855 init1: 855 opt: 855 Z-score: 1051.8 bits: 200.3 E(): 6.1e-50 Smith-Waterman score: 855; 100.000% identity (100.000% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS 10 20 30 40 50 60 70 80 90 100 110 120 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII 70 80 90 100 110 120 130 fk0470 TYASDWKEIPVLIY :::::::::::::: gi|620 TYASDWKEIPVLIY 130 >>gi|108999807|ref|XP_001114361.1| PREDICTED: similar to (408 aa) initn: 532 init1: 532 opt: 532 Z-score: 652.3 bits: 128.0 E(): 1.1e-27 Smith-Waterman score: 532; 94.624% identity (95.699% similar) in 93 aa overlap (1-93:238-330) 10 20 30 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQV :::::::::::::::::::::::::::::: gi|108 PAGRSRAAVWRFCARPGLLVLRVWSGGSDRAGLSLSQLIVQNTLPVACLLFTMASSDIQV 210 220 230 240 250 260 40 50 60 70 80 90 fk0470 KELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKVNEAIH :::::::::::::::::::::::::::::::::::::::::::::::::::::: .:: gi|108 KELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEV 270 280 290 300 310 320 100 110 120 130 fk0470 RKQDINLCNGQINFISITGRKQNCSYTVIITYASDWKEIPVLIY :: gi|108 LKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERLREKDK 330 340 350 360 370 380 >>gi|122890670|emb|CAM12864.1| stathmin 1/oncoprotein 18 (86 aa) initn: 397 init1: 397 opt: 397 Z-score: 497.5 bits: 97.1 E(): 4.5e-19 Smith-Waterman score: 397; 92.958% identity (94.366% similar) in 71 aa overlap (23-93:1-71) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS :::::::::::::::::::::::::::::::::::::: gi|122 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS 10 20 30 70 80 90 100 110 120 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII :::::::::::::::::::::::: .:: :: gi|122 PPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKA 40 50 60 70 80 130 fk0470 TYASDWKEIPVLIY >>gi|149024226|gb|EDL80723.1| rCG31023, isoform CRA_a [R (115 aa) initn: 397 init1: 397 opt: 397 Z-score: 495.8 bits: 97.2 E(): 5.7e-19 Smith-Waterman score: 397; 92.958% identity (94.366% similar) in 71 aa overlap (23-93:1-71) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS :::::::::::::::::::::::::::::::::::::: gi|149 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS 10 20 30 70 80 90 100 110 120 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII :::::::::::::::::::::::: .:: :: gi|149 PPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKELTHKMERLREKDKHVEE 40 50 60 70 80 90 130 fk0470 TYASDWKEIPVLIY gi|149 VRKNKESKDPADETEAD 100 110 >>gi|122890671|emb|CAM12865.1| stathmin 1/oncoprotein 18 (116 aa) initn: 397 init1: 397 opt: 397 Z-score: 495.7 bits: 97.2 E(): 5.7e-19 Smith-Waterman score: 408; 70.588% identity (79.412% similar) in 102 aa overlap (23-113:1-102) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS :::::::::::::::::::::::::::::::::::::: gi|122 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS 10 20 30 70 80 90 100 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQ-----------DINLCNGQINFISITG :::::::::::::::::::::::: .:: :: . :.:. .:. .. : gi|122 PPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHKWLPNWNVCERRISTLKKCG 40 50 60 70 80 90 110 120 130 fk0470 RKQNCSYTVIITYASDWKEIPVLIY : .: gi|122 RTKNPKTLLTRLKLTNLF 100 110 >>gi|134974|sp|P13668.2|STMN1_RAT Stathmin (Phosphoprote (149 aa) initn: 397 init1: 397 opt: 397 Z-score: 494.2 bits: 97.3 E(): 6.9e-19 Smith-Waterman score: 397; 92.958% identity (94.366% similar) in 71 aa overlap (23-93:1-71) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS :::::::::::::::::::::::::::::::::::::: gi|134 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS 10 20 30 70 80 90 100 110 120 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII :::::::::::::::::::::::: .:: :: gi|134 PPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAE 40 50 60 70 80 90 130 fk0470 TYASDWKEIPVLIY gi|134 EKLTHKMEANKENREAQMAAKLERLREKDKHVEEVRKNKESKDPADETEAD 100 110 120 130 140 >>gi|134973|sp|P16949.3|STMN1_HUMAN Stathmin (Phosphopro (149 aa) initn: 397 init1: 397 opt: 397 Z-score: 494.2 bits: 97.3 E(): 6.9e-19 Smith-Waterman score: 397; 92.958% identity (94.366% similar) in 71 aa overlap (23-93:1-71) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS :::::::::::::::::::::::::::::::::::::: gi|134 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS 10 20 30 70 80 90 100 110 120 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII :::::::::::::::::::::::: .:: :: gi|134 PPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAE 40 50 60 70 80 90 130 fk0470 TYASDWKEIPVLIY gi|134 EKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD 100 110 120 130 140 >>gi|148698063|gb|EDL30010.1| mCG12955, isoform CRA_b [M (115 aa) initn: 393 init1: 393 opt: 393 Z-score: 490.9 bits: 96.3 E(): 1.1e-18 Smith-Waterman score: 393; 91.549% identity (94.366% similar) in 71 aa overlap (23-93:1-71) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS :::::::::::::::::::::::::::::::::.:::: gi|148 MASSDIQVKELEKRASGQAFELILSPRSKESVPDFPLS 10 20 30 70 80 90 100 110 120 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII :::::::::::::::::::::::: .:: :: gi|148 PPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKELTHKMERLREKDKHVEE 40 50 60 70 80 90 130 fk0470 TYASDWKEIPVLIY gi|148 VRKNKESKDPADETEAD 100 110 >>gi|126328591|ref|XP_001363136.1| PREDICTED: similar to (149 aa) initn: 393 init1: 393 opt: 393 Z-score: 489.4 bits: 96.4 E(): 1.3e-18 Smith-Waterman score: 393; 91.549% identity (94.366% similar) in 71 aa overlap (23-93:1-71) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS ::::::::::::::::::::::::::::::.::::::: gi|126 MASSDIQVKELEKRASGQAFELILSPRSKEAVPEFPLS 10 20 30 70 80 90 100 110 120 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII :::::::::::::::::::::::: .:: :: gi|126 PPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAE 40 50 60 70 80 90 130 fk0470 TYASDWKEIPVLIY gi|126 EKLTHKMEANKENREAQMAAKLERLREKDKHMEEVRKNRESKDPADENGAD 100 110 120 130 140 >>gi|148699125|gb|EDL31072.1| mCG7351 [Mus musculus] (149 aa) initn: 393 init1: 393 opt: 393 Z-score: 489.4 bits: 96.4 E(): 1.3e-18 Smith-Waterman score: 393; 91.549% identity (94.366% similar) in 71 aa overlap (23-93:1-71) 10 20 30 40 50 60 fk0470 AGLSLSQLIVQNTLPVACLLFTMASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLS :::::::::::::::::::::::::::::::::.:::: gi|148 MASSDIQVKELEKRASGQAFELILSPRSKESVPDFPLS 10 20 30 70 80 90 100 110 120 fk0470 PPKKKDLSLEEIQKKLEAAEERRKVNEAIHRKQDINLCNGQINFISITGRKQNCSYTVII :::::::::::::::::::::::: .:: :: gi|148 PPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNDFSKMAE 40 50 60 70 80 90 130 fk0470 TYASDWKEIPVLIY gi|148 EKLTHKMEANKENREAQMAAKLERLREKDKHVEEVRKNKESKDPADETEAD 100 110 120 130 140 134 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Mon Aug 11 02:25:24 2008 done: Mon Aug 11 02:28:25 2008 Total Scan time: 547.910 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]