hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-02341349/chunk_1/iprscan-20080811-02341349.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk04727 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00192 496.7 1e-144 8 SM00179 83.2 3.2e-20 2 SM00181 68.8 6.8e-16 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/5 89 125 .. 1 32 [] 3.3 1.3e+02 SM00192 1/8 89 126 .. 1 47 [] 70.3 2.4e-16 SM00181 2/5 128 166 .. 1 32 [] 2.3 1.6e+02 SM00192 2/8 128 167 .. 1 47 [] 65.8 5.5e-15 SM00192 3/8 169 208 .. 1 47 [] 53.8 2.3e-11 SM00192 4/8 210 247 .. 1 47 [] 70.3 2.5e-16 SM00181 3/5 210 246 .. 1 32 [] 1.7 1.8e+02 SM00192 5/8 249 288 .. 1 47 [] 59.9 3.3e-13 SM00192 6/8 295 332 .. 1 47 [] 68.8 6.9e-16 SM00192 7/8 334 371 .. 1 47 [] 57.7 1.5e-12 SM00192 8/8 374 414 .. 1 47 [] 50.3 2.5e-10 SM00179 1/2 413 452 .. 1 34 [] 34.6 1.4e-05 SM00181 4/5 416 452 .. 1 32 [] 32.6 5.4e-05 SM00179 2/2 453 492 .. 1 34 [] 48.6 8.2e-10 SM00181 5/5 456 492 .. 1 32 [] 29.0 0.00066 Alignments of top-scoring domains: SM00181: domain 1 of 5, from 89 to 125: score 3.3, E = 1.3e+02 *->eCa....pCsnGgtEqnGtCi..sytC.....CpgpGytg.rCe<-* C++++ C nG +Ci+ ++C+++++C +G ++C+ fk04727 89 KCEpsqfQCTNG------RCItlLWKCdgdedCV-DGSDEkNCV 125 SM00192: domain 1 of 8, from 89 to 126: score 70.3, E = 2.4e-16 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps +C p+ +FqC ngrCI l w+CDGd DC DGSDE +nC + fk04727 89 KCEPS---QFQCTNGRCITLLWKCDGDEDCVDGSDE------KNCVK 126 <-* fk04727 - - SM00181: domain 2 of 5, from 128 to 166: score 2.3, E = 1.6e+02 *->eCa....pCsnGgtEqnGtCi..sytC.....CpgpGytg...rCe< Ca+++ C nG +C+++ ++C+++++C +G ++++C fk04727 128 TCAesdfVCNNG------QCVpsRWKCdgdpdCE-DGSDEspeQCH 166 -* fk04727 - - SM00192: domain 2 of 8, from 128 to 167: score 65.8, E = 5.5e-15 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps tC+++ F C+ng+C+p++w+CDGd+DC+DGSDE+p e C+ fk04727 128 TCAES---DFVCNNGQCVPSRWKCDGDPDCEDGSDESP----EQCHM 167 <-* fk04727 - - SM00192: domain 3 of 8, from 169 to 208: score 53.8, E = 2.3e-11 *->tCspgepneFqCg..ngrCIplswvCDGddDCgDGSDEdpaidpenC tC+ + e Cg ++ +CIp sw+CDG++DC G+DE enC fk04727 169 TCRIH---EISCGahSTQCIPVSWRCDGENDCDSGEDE------ENC 206 ps<-* ++ fk04727 207 GN 208 SM00192: domain 4 of 8, from 210 to 247: score 70.3, E = 2.5e-16 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps tCsp+ eF+C++grCI++ +vC+G+dDC+DGSDE ++C++ fk04727 210 TCSPD---EFTCSSGRCISRNFVCNGQDDCSDGSDE------LDCAP 247 <-* fk04727 - - SM00181: domain 3 of 5, from 210 to 246: score 1.7, E = 1.8e+02 *->eCa....pCsnGgtEqnGtCi..sytC.....CpgpGytg.rCe<-* C++++ Cs G +Ci++ + C+++++C +G C fk04727 210 TCSpdefTCSSG------RCIsrNFVCngqddCS-DGSDElDCA 246 SM00192: domain 5 of 8, from 249 to 288: score 59.9, E = 3.3e-13 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps tC+++ eFqC+++ CIp swvCD d DC+D SDE+ e C++ fk04727 249 TCGAH---EFQCSTSSCIPISWVCDDDADCSDQSDESL----EQCGR 288 <-* fk04727 - - SM00192: domain 6 of 8, from 295 to 332: score 68.8, E = 6.9e-16 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps +C+++ e qCg+g+CI++ w+CDGd+DC DGSDE nCps fk04727 295 KCPAS---EIQCGSGECIHKKWRCDGDPDCKDGSDE------VNCPS 332 <-* fk04727 - - SM00192: domain 7 of 8, from 334 to 371: score 57.7, E = 1.5e-12 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps tC+p+ +F C +g CI+ s++C+G DC DGSDE nC + fk04727 334 TCRPD---QFECEDGSCIHGSRQCNGIRDCVDGSDE------VNCKN 371 <-* fk04727 - - SM00192: domain 8 of 8, from 374 to 414: score 50.3, E = 2.5e-10 *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps +C + F+C++g+CI+ s+vC+ + DC D+SDE+ + C+ fk04727 374 QCLGP--GKFKCRSGECIDISKVCNQEQDCRDWSDEPL----KECHI 414 <-* fk04727 - - SM00179: domain 1 of 2, from 413 to 452: score 34.6, E = 1.4e-05 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt....rnCe<- i+EC +++ C++ +C + v +Y+C+C +G++ ++++C fk04727 413 HINEClvnngGCSH-----ICKDlVIGYECdCAAGFElidrKTCG 452 * fk04727 - - SM00181: domain 4 of 5, from 416 to 452: score 32.6, E = 5.4e-05 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg....rCe<- eC+ ++++Cs+ +C + +y+C+C+ +G+++ ++++C fk04727 416 ECLvnngGCSH-------ICKdlviGYECdCA-AGFELidrkTCG 452 * fk04727 - - SM00179: domain 2 of 2, from 453 to 492: score 48.6, E = 8.2e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- DiDEC+++++C++ +CiN G+Y+C+C Gy+ + ++ C+ fk04727 453 DIDECqnpgICSQ-----ICINlKGGYKCeCSRGYQmdlatGVCK 492 * fk04727 - - SM00181: domain 5 of 5, from 456 to 492: score 29.0, E = 0.00066 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eC++++ Cs+ +Ci+ +++y+C+C Gy+ + ++ C+ fk04727 456 ECQnpgICSQ-------ICInlkgGYKCeCS-RGYQMdlatgVCK 492 * fk04727 - - //