hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-11481850/chunk_1/iprscan-20090618-11481850.nocrc
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Query sequence: fk04732
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF02257.6.fs    RFX DNA-binding domain                  190.9    1.8e-58   1
PF02257.6.ls    RFX DNA-binding domain                  192.8    7.3e-55   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF02257.6.fs      1/1     106   188 ..     1    84 []   190.9  1.8e-58
PF02257.6.ls      1/1     106   188 ..     1    84 []   192.8  7.3e-55
PF02178.9.ls      1/1     493   505 ..     1    13 []    11.4     0.23

Alignments of top-scoring domains:
PF02257.6.fs: domain 1 of 1, from 106 to 188: score 190.9, E = 1.8e-58
                   *->ddaseqNresnrqvfPAtlqWLkenyEeqedvclPRsklYahYlkhC
                      d++se++++sn+++++ +++W+++++Ee++d+clP++++Y++Y+k+C
     fk04732   106    DKSSEPSTLSNEEYMY-AYRWIRNHLEEHTDTCLPKQSVYDAYRKYC 151  

                   eslaClkPlnaASFGKLIRsvFpdLkTRRLGtRGqSK<-*
                   eslaC++Pl++A+FGK+IR++Fpd+k+RRLG+RGqSK   
     fk04732   152 ESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSK    188  

PF02257.6.ls: domain 1 of 1, from 106 to 188: score 192.8, E = 7.3e-55
                   *->ddaseqNresnrqvfPAtlqWLkenyEeqedvclPRsklYahYlkhC
                      d++se++++sn+++++ +++W+++++Ee++d+clP++++Y++Y+k+C
     fk04732   106    DKSSEPSTLSNEEYMY-AYRWIRNHLEEHTDTCLPKQSVYDAYRKYC 151  

                   eslaClkPlnaASFGKLIRsvFpdLkTRRLGtRGqSK<-*
                   eslaC++Pl++A+FGK+IR++Fpd+k+RRLG+RGqSK   
     fk04732   152 ESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSK    188  

PF02178.9.ls: domain 1 of 1, from 493 to 505: score 11.4, E = 0.23
                   *->kRkRGRPrKaata<-*
                      kRkRGRPrK+++    
     fk04732   493    KRKRGRPRKKSGG    505  

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