hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-02464151/chunk_1/iprscan-20080811-02464151.nocrc
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Query sequence: fk04789
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03166.5.ls MH2 domain                                     421.4   1.2e-123   1
PF03166.5.fs MH2 domain                                     419.6     4e-123   1
PF03165.7.ls MH1 domain                                     229.4    7.4e-66   1
PF03165.7.fs MH1 domain                                     227.6    2.6e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03165.7.fs   1/1      72   205 ..     1   120 []   227.6  2.6e-65
PF03165.7.ls   1/1      72   205 ..     1   120 []   229.4  7.4e-66
PF03166.5.fs   1/1     302   479 ..     1   228 []   419.6   4e-123
PF03166.5.ls   1/1     302   479 ..     1   228 []   421.4 1.2e-123

Alignments of top-scoring domains:
PF03165.7.fs: domain 1 of 1, from 72 to 205: score 227.6, E = 2.6e-65
                   *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIp...
                      ekw+ekav+sL+KKLKk  ++l+eL++A++++ +++ tkCvtIp++ 
     fk04789    72    EKWCEKAVKSLVKKLKKT-GRLDELEKAITTQ-NCN-TKCVTIPstc 115  

                   ..........................nrsLdGRLqvnaqrkglPHviyCL
                   ++  + +++++ ++ ++++  + ++++rsLdGRLqv ++rkglPHviyC 
     fk04789   116 seiwglstpntidqwdttglysfseqTRSLDGRLQV-SHRKGLPHVIYC- 163  

                   RqadRlwRWPDLqsqnELKaiptCeyagfeskkdeaCnPyvCiNPYHysR
                       RlwRWPDL+s++ELKai++Ceya f++kkde     vC+NPYHy+R
     fk04789   164 ----RLWRWPDLHSHHELKAIENCEYA-FNLKKDE-----VCVNPYHYQR 203  

                   ve<-*
                   ve   
     fk04789   204 VE    205  

PF03165.7.ls: domain 1 of 1, from 72 to 205: score 229.4, E = 7.4e-66
                   *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIp...
                      ekw+ekav+sL+KKLKk  ++l+eL++A++++ +++ tkCvtIp++ 
     fk04789    72    EKWCEKAVKSLVKKLKKT-GRLDELEKAITTQ-NCN-TKCVTIPstc 115  

                   ..........................nrsLdGRLqvnaqrkglPHviyCL
                   ++  + +++++ ++ ++++  + ++++rsLdGRLqv ++rkglPHviyC 
     fk04789   116 seiwglstpntidqwdttglysfseqTRSLDGRLQV-SHRKGLPHVIYC- 163  

                   RqadRlwRWPDLqsqnELKaiptCeyagfeskkdeaCnPyvCiNPYHysR
                       RlwRWPDL+s++ELKai++Ceya f++kkde     vC+NPYHy+R
     fk04789   164 ----RLWRWPDLHSHHELKAIENCEYA-FNLKKDE-----VCVNPYHYQR 203  

                   ve<-*
                   ve   
     fk04789   204 VE    205  

PF03166.5.fs: domain 1 of 1, from 302 to 479: score 419.6, E = 4e-123
                   *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge
                      ysep++WcsIaYyEln+rVGEtf++s++   s+tvDGft   Dps  
     fk04789   302    YSEPAFWCSIAYYELNQRVGETFHASQP---SLTVDGFT---DPS-- 340  

                   nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS
                   n++RfCLG+LsNvnR  ++++e tRrhIG+GVrL+y  +Ge  V+++++S
     fk04789   341 NSERFCLGLLSNVNR--NATVEMTRRHIGRGVRLYYI-GGE--VFAECLS 385  

                   dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan
                   ds+IFVqSp++++++G ++p+ +V+K+pPg++lK+F++++f+ ll q++n
     fk04789   386 DSAIFVQSPNCNQRYG-WHPA-TVCKIPPGCNLKIFNNQEFAALLAQSVN 433  

                   sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR
                   +gfeA                                  v++L++mCtiR
     fk04789   434 QGFEA----------------------------------VYQLTRMCTIR 449  

                   iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
                   +SFVKGWG++Y +RQ++tstPCWiE+hLn+p   
     fk04789   450 MSFVKGWGAEY-RRQTVTSTPCWIELHLNGP    479  

PF03166.5.ls: domain 1 of 1, from 302 to 479: score 421.4, E = 1.2e-123
                   *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge
                      ysep++WcsIaYyEln+rVGEtf++s++   s+tvDGft   Dps  
     fk04789   302    YSEPAFWCSIAYYELNQRVGETFHASQP---SLTVDGFT---DPS-- 340  

                   nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS
                   n++RfCLG+LsNvnR  ++++e tRrhIG+GVrL+y  +Ge  V+++++S
     fk04789   341 NSERFCLGLLSNVNR--NATVEMTRRHIGRGVRLYYI-GGE--VFAECLS 385  

                   dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan
                   ds+IFVqSp++++++G ++p+ +V+K+pPg++lK+F++++f+ ll q++n
     fk04789   386 DSAIFVQSPNCNQRYG-WHPA-TVCKIPPGCNLKIFNNQEFAALLAQSVN 433  

                   sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR
                   +gfeA                                  v++L++mCtiR
     fk04789   434 QGFEA----------------------------------VYQLTRMCTIR 449  

                   iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
                   +SFVKGWG++Y +RQ++tstPCWiE+hLn+p   
     fk04789   450 MSFVKGWGAEY-RRQTVTSTPCWIELHLNGP    479  

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