hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-02464151/chunk_1/iprscan-20080811-02464151.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk04789 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03166.5.ls MH2 domain 421.4 1.2e-123 1 PF03166.5.fs MH2 domain 419.6 4e-123 1 PF03165.7.ls MH1 domain 229.4 7.4e-66 1 PF03165.7.fs MH1 domain 227.6 2.6e-65 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03165.7.fs 1/1 72 205 .. 1 120 [] 227.6 2.6e-65 PF03165.7.ls 1/1 72 205 .. 1 120 [] 229.4 7.4e-66 PF03166.5.fs 1/1 302 479 .. 1 228 [] 419.6 4e-123 PF03166.5.ls 1/1 302 479 .. 1 228 [] 421.4 1.2e-123 Alignments of top-scoring domains: PF03165.7.fs: domain 1 of 1, from 72 to 205: score 227.6, E = 2.6e-65 *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIp... ekw+ekav+sL+KKLKk ++l+eL++A++++ +++ tkCvtIp++ fk04789 72 EKWCEKAVKSLVKKLKKT-GRLDELEKAITTQ-NCN-TKCVTIPstc 115 ..........................nrsLdGRLqvnaqrkglPHviyCL ++ + +++++ ++ ++++ + ++++rsLdGRLqv ++rkglPHviyC fk04789 116 seiwglstpntidqwdttglysfseqTRSLDGRLQV-SHRKGLPHVIYC- 163 RqadRlwRWPDLqsqnELKaiptCeyagfeskkdeaCnPyvCiNPYHysR RlwRWPDL+s++ELKai++Ceya f++kkde vC+NPYHy+R fk04789 164 ----RLWRWPDLHSHHELKAIENCEYA-FNLKKDE-----VCVNPYHYQR 203 ve<-* ve fk04789 204 VE 205 PF03165.7.ls: domain 1 of 1, from 72 to 205: score 229.4, E = 7.4e-66 *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIp... ekw+ekav+sL+KKLKk ++l+eL++A++++ +++ tkCvtIp++ fk04789 72 EKWCEKAVKSLVKKLKKT-GRLDELEKAITTQ-NCN-TKCVTIPstc 115 ..........................nrsLdGRLqvnaqrkglPHviyCL ++ + +++++ ++ ++++ + ++++rsLdGRLqv ++rkglPHviyC fk04789 116 seiwglstpntidqwdttglysfseqTRSLDGRLQV-SHRKGLPHVIYC- 163 RqadRlwRWPDLqsqnELKaiptCeyagfeskkdeaCnPyvCiNPYHysR RlwRWPDL+s++ELKai++Ceya f++kkde vC+NPYHy+R fk04789 164 ----RLWRWPDLHSHHELKAIENCEYA-FNLKKDE-----VCVNPYHYQR 203 ve<-* ve fk04789 204 VE 205 PF03166.5.fs: domain 1 of 1, from 302 to 479: score 419.6, E = 4e-123 *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge ysep++WcsIaYyEln+rVGEtf++s++ s+tvDGft Dps fk04789 302 YSEPAFWCSIAYYELNQRVGETFHASQP---SLTVDGFT---DPS-- 340 nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS n++RfCLG+LsNvnR ++++e tRrhIG+GVrL+y +Ge V+++++S fk04789 341 NSERFCLGLLSNVNR--NATVEMTRRHIGRGVRLYYI-GGE--VFAECLS 385 dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan ds+IFVqSp++++++G ++p+ +V+K+pPg++lK+F++++f+ ll q++n fk04789 386 DSAIFVQSPNCNQRYG-WHPA-TVCKIPPGCNLKIFNNQEFAALLAQSVN 433 sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR +gfeA v++L++mCtiR fk04789 434 QGFEA----------------------------------VYQLTRMCTIR 449 iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-* +SFVKGWG++Y +RQ++tstPCWiE+hLn+p fk04789 450 MSFVKGWGAEY-RRQTVTSTPCWIELHLNGP 479 PF03166.5.ls: domain 1 of 1, from 302 to 479: score 421.4, E = 1.2e-123 *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge ysep++WcsIaYyEln+rVGEtf++s++ s+tvDGft Dps fk04789 302 YSEPAFWCSIAYYELNQRVGETFHASQP---SLTVDGFT---DPS-- 340 nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS n++RfCLG+LsNvnR ++++e tRrhIG+GVrL+y +Ge V+++++S fk04789 341 NSERFCLGLLSNVNR--NATVEMTRRHIGRGVRLYYI-GGE--VFAECLS 385 dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan ds+IFVqSp++++++G ++p+ +V+K+pPg++lK+F++++f+ ll q++n fk04789 386 DSAIFVQSPNCNQRYG-WHPA-TVCKIPPGCNLKIFNNQEFAALLAQSVN 433 sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR +gfeA v++L++mCtiR fk04789 434 QGFEA----------------------------------VYQLTRMCTIR 449 iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-* +SFVKGWG++Y +RQ++tstPCWiE+hLn+p fk04789 450 MSFVKGWGAEY-RRQTVTSTPCWIELHLNGP 479 //