hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-02464151/chunk_1/iprscan-20080811-02464151.nocrc
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Query sequence: fk04789
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00524                                                 376.5   1.6e-108   1
SM00523                                                 231.7    6.3e-65   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00523     1/1      70   208 ..     1   124 []   231.7  6.3e-65
SM00524     1/1     306   477 ..     1   212 []   376.5 1.6e-108

Alignments of top-scoring domains:
SM00523: domain 1 of 1, from 70 to 208: score 231.7, E = 6.3e-65
                   *->eeekwakkavesLvKkLKkkNkqqLeeLlqAVeSkgkpptrCvtipr
                      +eekw++kav+sLvKkLKk   + L+eL++A++++++++ +Cvtip 
     fk04789    70    QEEKWCEKAVKSLVKKLKKT--GRLDELEKAITTQNCNT-KCVTIP- 112  

                   e.............................RslDgRlqvsdplQadrkgl
                   ++ ++  + +++++ ++ ++++  + ++++RslDgRlqvs     +rkgl
     fk04789   113 StcseiwglstpntidqwdttglysfseqtRSLDGRLQVS-----HRKGL 157  

                   PhVlycRLfRWPDLqsddkhELKalptCqyafesksnpegevCcNPYHYs
                   PhV+ycRL+RWPDL+s  +hELKa++ C+yaf++k++   evC+NPYHY+
     fk04789   158 PHVIYCRLWRWPDLHS--HHELKAIENCEYAFNLKKD---EVCVNPYHYQ 202  

                   rverpe<-*
                   rve p+   
     fk04789   203 RVETPV    208  

SM00524: domain 1 of 1, from 306 to 477: score 376.5, E = 1.6e-108
                   *->esWcsIaYyElntRVGetfkvsspdphtvtVDGftdpssdgsrfcLG
                      ++WcsIaYyEln+RVGetf++s+p   + tVDGftdp s++ rfcLG
     fk04789   306    AFWCSIAYYELNQRVGETFHASQP---SLTVDGFTDP-SNSERFCLG 348  

                   qlsNvnRneaiekiRkhIGkGvqLsyendqGdVwiynrsdspIFVqSptl
                   +lsNvnRn+++e +R+hIG+Gv+L+y +  G+V+++++sds+IFVqSp++
     fk04789   349 LLSNVNRNATVEMTRRHIGRGVRLYYIG--GEVFAECLSDSAIFVQSPNC 396  

                   depsgrplsdtVhKlpPgysqKalKvFDmrkfaqqmrdaalsaqaAaaaq
                   ++ +g+++ +tV+K+pPg++   lK+F++++fa                 
     fk04789   397 NQRYGWHP-ATVCKIPPGCN---LKIFNNQEFAA---------------- 426  

                   aAavaGmapyigekllerelakgaegvydlrrmCtiRiSFVKGWGedYsR
                                 ll++++++g+e+vy+l+rmCtiR+SFVKGWG++Y+R
     fk04789   427 --------------LLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRR 462  

                   qditstPCWiEvhLn<-*
                   q++tstPCWiE+hLn   
     fk04789   463 QTVTSTPCWIELHLN    477  

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