hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-02525656/chunk_1/iprscan-20080811-02525656.nocrc
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Query sequence: fk04825
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       224.6      2e-64   7
PF00400.22.fs WD domain, G-beta repeat                       215.1    1.5e-61   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/7      32    70 ..     1    38 []    32.0  4.8e-08
PF00400.22.ls   1/7      32    70 ..     1    38 []    34.0  4.9e-07
PF00400.22.ls   2/7      74   112 ..     1    38 []    24.6  0.00033
PF00400.22.fs   2/7      74   112 ..     1    38 []    22.6  2.1e-05
PF00400.22.fs   3/7     120   157 ..     1    38 []    27.5  8.7e-07
PF00400.22.ls   3/7     120   157 ..     1    38 []    29.5  1.1e-05
PF00400.22.fs   4/7     161   199 ..     1    38 []    41.6  9.7e-11
PF00400.22.ls   4/7     161   199 ..     1    38 []    43.5  6.6e-10
PF00400.22.fs   5/7     203   241 ..     1    38 []    43.1  3.6e-11
PF00400.22.ls   5/7     203   241 ..     1    38 []    45.0  2.3e-10
PF00400.22.fs   6/7     259   285 ..    11    38 .]    16.4   0.0012
PF00400.22.ls   7/7     289   327 .]     1    38 []    33.9  5.2e-07
PF00400.22.fs   7/7     289   327 .]     1    38 []    31.9    5e-08

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 7, from 32 to 70: score 32.0, E = 4.8e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          ++l+gH + ++++ ++ d ++ll+s+S Dg++ +Wd   
     fk04825    32    MRTRrTLrGHLAKIYAMHWATD-SKLLVSASQDGKLIVWD    70   

PF00400.22.ls: domain 1 of 7, from 32 to 70: score 34.0, E = 4.9e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          ++l+gH + ++++ ++ d ++ll+s+S Dg++ +Wd   
     fk04825    32    MRTRrTLrGHLAKIYAMHWATD-SKLLVSASQDGKLIVWD    70   

PF00400.22.ls: domain 2 of 7, from 74 to 112: score 24.6, E = 0.00033
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + ++ ++  +s+V+ +a++p+ g+++a+g+ D+ + i++   
     fk04825    74    TNKVhAIpLRSSWVMTCAYAPS-GNFVACGGLDNMCSIYN    112  

PF00400.22.fs: domain 2 of 7, from 74 to 112: score 22.6, E = 2.1e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + ++ ++  +s+V+ +a++p+ g+++a+g+ D+ + i++   
     fk04825    74    TNKVhAIpLRSSWVMTCAYAPS-GNFVACGGLDNMCSIYN    112  

PF00400.22.fs: domain 3 of 7, from 120 to 157: score 27.5, E = 8.7e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++ ++l++Ht+  +c++f  d  + ++++S D t+ +Wd   
     fk04825   120    VKVSrELsAHTGYLSCCRFLDD--NNIVTSSGDTTCALWD    157  

PF00400.22.ls: domain 3 of 7, from 120 to 157: score 29.5, E = 1.1e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++ ++l++Ht+  +c++f  d  + ++++S D t+ +Wd   
     fk04825   120    VKVSrELsAHTGYLSCCRFLDD--NNIVTSSGDTTCALWD    157  

PF00400.22.fs: domain 4 of 7, from 161 to 199: score 41.6, E = 9.7e-11
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g++k+v+ gHt+ ++++a+spd  +l++sg +D + k+Wd   
     fk04825   161    GQQKtVFvGHTGDCMSLAVSPD-FNLFISGACDASAKLWD    199  

PF00400.22.ls: domain 4 of 7, from 161 to 199: score 43.5, E = 6.6e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g++k+v+ gHt+ ++++a+spd  +l++sg +D + k+Wd   
     fk04825   161    GQQKtVFvGHTGDCMSLAVSPD-FNLFISGACDASAKLWD    199  

PF00400.22.fs: domain 5 of 7, from 203 to 241: score 43.1, E = 3.6e-11
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+c ++++gH+s +++++f p+ g+ +++gS+D +++++d   
     fk04825   203    GTCRqTFtGHESDINAICFFPN-GEAICTGSDDASCRLFD    241  

PF00400.22.ls: domain 5 of 7, from 203 to 241: score 45.0, E = 2.3e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+c ++++gH+s +++++f p+ g+ +++gS+D +++++d   
     fk04825   203    GTCRqTFtGHESDINAICFFPN-GEAICTGSDDASCRLFD    241  

PF00400.22.fs: domain 6 of 7, from 259 to 285: score 16.4, E = 0.0012
                   *->tVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++t+vafs + g+ll+ g +D ++ +Wd   
     fk04825   259    GITSVAFSLS-GRLLFAGYDDFNCNVWD    285  

PF00400.22.ls: domain 7 of 7, from 289 to 327: score 33.9, E = 5.2e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e +++l+gH + V+c+ +  d g  +a+gS+D  +kiW+   
     fk04825   289    SERVgILsGHDNRVSCLGVTAD-GMAVATGSWDSFLKIWN    327  

PF00400.22.fs: domain 7 of 7, from 289 to 327: score 31.9, E = 5e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e +++l+gH + V+c+ +  d g  +a+gS+D  +kiW+   
     fk04825   289    SERVgILsGHDNRVSCLGVTAD-GMAVATGSWDSFLKIWN    327  

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