hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-02525656/chunk_1/iprscan-20080811-02525656.nocrc
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Query sequence: fk04825
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 254.9    6.5e-72   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      31    70 ..     1    46 []    41.9  8.5e-08
SM00320    2/7      73   112 ..     1    46 []    26.9   0.0027
SM00320    3/7     119   157 ..     1    46 []    35.2    9e-06
SM00320    4/7     160   199 ..     1    46 []    42.2  6.8e-08
SM00320    5/7     202   241 ..     1    46 []    46.1  4.6e-09
SM00320    6/7     244   285 ..     1    46 []    26.2   0.0046
SM00320    7/7     288   327 .]     1    46 []    36.4    4e-06

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 31 to 70: score 41.9, E = 8.5e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +  rtl+gH +   ++++ +  d+      +ll+s+s+Dg++ +W
     fk04825    31    QmRTRRTLRGHLA--KIYAMHWATDS------KLLVSASqDGKLIVW 69   

                   d<-*
                   d   
     fk04825    70 D    70   

SM00320: domain 2 of 7, from 73 to 112: score 26.9, E = 0.0027
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ ++ ++  ++  +V ++a+ p+g      n++a+g+ D+ + ++
     fk04825    73    TtNKVHAIPLRSS--WVMTCAYAPSG------NFVACGGlDNMCSIY 111  

                   d<-*
                   +   
     fk04825   112 N    112  

SM00320: domain 3 of 7, from 119 to 157: score 35.2, E = 9e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + k+ r+l++Htg  + ++++f +d       n ++++s+D t+ lW
     fk04825   119    NvKVSRELSAHTG--YLSCCRFLDD-------NNIVTSSgDTTCALW 156  

                   d<-*
                   d   
     fk04825   157 D    157  

SM00320: domain 4 of 7, from 160 to 199: score 42.2, E = 6.8e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+++  ++ gHtg  ++ s+a+spd       nl++sg  D + +lW
     fk04825   160    TgQQKTVFVGHTG--DCMSLAVSPDF------NLFISGAcDASAKLW 198  

                   d<-*
                   d   
     fk04825   199 D    199  

SM00320: domain 5 of 7, from 202 to 241: score 46.1, E = 4.6e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++ +t++gH++  ++++++f p+g      + +++gs+D ++rl+
     fk04825   202    EgTCRQTFTGHES--DINAICFFPNG------EAICTGSdDASCRLF 240  

                   d<-*
                   d   
     fk04825   241 D    241  

SM00320: domain 6 of 7, from 244 to 285: score 26.2, E = 0.0046
                   *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl
                       ++ l  ++ H++  +++tsvafs +g      +ll++g +D ++ +
     fk04825   244    AdQELICFS-HESIiCGITSVAFSLSG------RLLFAGYdDFNCNV 283  

                   Wd<-*
                   Wd   
     fk04825   284 WD    285  

SM00320: domain 7 of 7, from 288 to 327: score 36.4, E = 4e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ + +l+gH++  +V+++ +  dg        +a+gs+D+ +++W
     fk04825   288    KsERVGILSGHDN--RVSCLGVTADG------MAVATGSwDSFLKIW 326  

                   d<-*
                   +   
     fk04825   327 N    327  

//