hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-02591677/chunk_1/iprscan-20080811-02591677.nocrc
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Query sequence: fk04920
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00643.14.ls B-box zinc finger                               46.9    6.2e-11   1
PF00643.14.fs B-box zinc finger                               45.1    7.4e-11   1
PF00622.18.fs SPRY domain                                     37.6    2.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00643.14.fs   1/1      43    84 ..     1    50 []    45.1  7.4e-11
PF00643.14.ls   1/1      43    84 ..     1    50 []    46.9  6.2e-11
PF00622.18.fs   1/1     301   331 ..     1    46 [.    37.6  2.5e-10

Alignments of top-scoring domains:
PF00643.14.fs: domain 1 of 1, from 43 to 84: score 45.1, E = 7.4e-11
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      + e +Cp+H+  e lslFC +D+++ C +C+ s +H      r Htv
     fk04920    43    RDESLCPQHH--EALSLFCYEDQEAVCLICAISHTH------RAHTV 81   

                   vpl<-*
                   vpl   
     fk04920    82 VPL    84   

PF00643.14.ls: domain 1 of 1, from 43 to 84: score 46.9, E = 6.2e-11
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      + e +Cp+H+  e lslFC +D+++ C +C+ s +H      r Htv
     fk04920    43    RDESLCPQHH--EALSLFCYEDQEAVCLICAISHTH------RAHTV 81   

                   vpl<-*
                   vpl   
     fk04920    82 VPL    84   

PF00622.18.fs: domain 1 of 1, from 301 to 331: score 37.6, E = 2.5e-10
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgge<
                      sG+hY+EVev++    +thw+vG++++sv           +rkgg+ 
     fk04920   301    SGRHYWEVEVGD----KTHWAVGVCRDSV-----------SRKGGC  331  

                   -*
                     
     fk04920     -    -    

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