hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-02591677/chunk_1/iprscan-20080811-02591677.nocrc
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Query sequence: fk04920
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00589                                                 105.6    5.7e-27   1
SM00336                                                  43.1    3.7e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00336    1/1      43    84 ..     1    51 []    43.1  3.7e-08
SM00589    1/1     247   300 ..     1    56 []   105.6  5.7e-27

Alignments of top-scoring domains:
SM00336: domain 1 of 1, from 43 to 84: score 43.1, E = 3.7e-08
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      + + lC++H+  e + +fC  ed+++ C++C  + +H      r H+
     fk04920    43    RDESLCPQHH--EALSLFC-YEDQEAVCLICAISHTH------RAHT 80   

                   vvll<-*
                   vv+l   
     fk04920    81 VVPL    84   

SM00589: domain 1 of 1, from 247 to 300: score 105.6, E = 5.7e-27
                   *->avdvtLDPdTAhpkLlLSeDrrsVrygdtkqkGsnlpdnPeRFdsyp
                       +dvtLDP+TAhp+L+LSeDr+sV++ +t+ +  +lpd+P+RF++yp
     fk04920   247    IADVTLDPETAHPNLVLSEDRKSVKFVETRLR--DLPDTPRRFTFYP 291  

                   cVLGsegFs<-*
                   cVL+ egF+   
     fk04920   292 CVLATEGFT    300  

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