hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-11542175/chunk_1/iprscan-20090618-11542175.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk05082 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00014.13.fs Kunitz/Bovine pancreatic trypsin inhibito 166.0 2.1e-57 2 PF00014.13.ls Kunitz/Bovine pancreatic trypsin inhibito 170.0 5.6e-48 2 PF07679.6.fs Immunoglobulin I-set domain 65.9 1.3e-18 1 PF07679.6.ls Immunoglobulin I-set domain 67.8 3.2e-17 1 PF00047.15.fs Immunoglobulin domain 29.2 3e-07 1 PF00095.11.fs WAP-type (Whey Acidic Protein) 'four-disu 28.4 7.3e-07 1 PF07648.6.fs Kazal-type serine protease inhibitor doma 27.5 2.1e-06 1 PF00047.15.ls Immunoglobulin domain 31.1 3.5e-06 1 PF00095.11.ls WAP-type (Whey Acidic Protein) 'four-disu 30.3 6.2e-06 1 PF07648.6.ls Kazal-type serine protease inhibitor doma 25.3 0.00021 1 PF07686.7.ls Immunoglobulin V-set domain 15.1 0.0015 1 PF00050.11.ls Kazal-type serine protease inhibitor doma 10.2 0.0033 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00095.11.fs 1/1 66 115 .. 1 48 [] 28.4 7.3e-07 PF00095.11.ls 1/1 66 115 .. 1 48 [] 30.3 6.2e-06 PF07648.6.fs 1/1 157 191 .. 1 47 [. 27.5 2.1e-06 PF07648.6.ls 1/1 157 199 .. 1 61 [] 25.3 0.00021 PF00050.11.ls 1/1 158 199 .. 1 61 [] 10.2 0.0033 PF07679.6.fs 1/1 234 328 .. 1 96 [] 65.9 1.3e-18 PF07679.6.ls 1/1 234 328 .. 1 96 [] 67.8 3.2e-17 PF07686.7.ls 1/1 234 330 .. 1 141 [] 15.1 0.0015 PF00047.15.fs 1/1 248 313 .. 1 65 [] 29.2 3e-07 PF00047.15.ls 1/1 248 313 .. 1 65 [] 31.1 3.5e-06 PF00014.13.ls 1/2 351 403 .. 1 54 [] 64.1 4.2e-16 PF00014.13.fs 1/2 351 403 .. 1 54 [] 62.1 3.2e-21 PF00014.13.ls 2/2 409 461 .. 1 54 [] 105.9 1.1e-28 PF00014.13.fs 2/2 409 461 .. 1 54 [] 103.9 8.8e-36 Alignments of top-scoring domains: PF00095.11.fs: domain 1 of 1, from 66 to 115: score 28.4, E = 7.3e-07 *->KpGsCPkvp.....siacglcaepnkktCqtDsdCpgnkKCCpngCG ++G CP +++ a + c + C tD++C +KCCpn CG fk05082 66 HAGICPNDMnpnlwVDAQSTCRRE----CETDQECETYEKCCPNVCG 108 kt.CvdP<-* ++Cv fk05082 109 TKsCVAA 115 PF00095.11.ls: domain 1 of 1, from 66 to 115: score 30.3, E = 6.2e-06 *->KpGsCPkvp.....siacglcaepnkktCqtDsdCpgnkKCCpngCG ++G CP +++ a + c + C tD++C +KCCpn CG fk05082 66 HAGICPNDMnpnlwVDAQSTCRRE----CETDQECETYEKCCPNVCG 108 kt.CvdP<-* ++Cv fk05082 109 TKsCVAA 115 PF07648.6.fs: domain 1 of 1, from 157 to 191: score 27.5, E = 2.1e-06 *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag +C++ C +e + C+sDG TY+N C++ +++C++g fk05082 157 KCKD---------RCEKEP--SFTCASDG-LTYYNRCYMDAEACSKG 191 <-* fk05082 - - PF07648.6.ls: domain 1 of 1, from 157 to 199: score 25.3, E = 0.00021 *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag +C++ C +e + C+sDG TY+N C++ +++C++g fk05082 157 KCKD---------RCEKEP--SFTCASDG-LTYYNRCYMDAEACSKG 191 flegelrlkydGeC<-* ++l C fk05082 192 -----ITLAVV-TC 199 PF00050.11.ls: domain 1 of 1, from 158 to 199: score 10.2, E = 0.0033 *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv C++ C +e + C+sDG TY N C + + aC fk05082 158 CKDR------------CEKEPSFTCASDGLTYYNRCYMDAEAC---- 188 eqgtniekkhdGpC<-* +g ++ ++ C fk05082 189 SKGITLAVV---TC 199 PF07679.6.fs: domain 1 of 1, from 234 to 328: score 65.9, E = 1.3e-18 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.....Gqpls P + p + V+ Ge+++f C+V G P P+++W K +++++ ++ fk05082 234 PALLNNPVHQSVTMGETVSFLCDVVGRPRPEITWEKQledreNVVMR 280 svllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasa + + r +v++++ ++ L+I+n+q D+G+YtC+A+N aG a++ fk05082 281 P---NHVRGNVVVTN---IAQLVIYNAQLQDAGIYTCTARNVAGVLRADF 324 eLtV<-* L V fk05082 325 PLSV 328 PF07679.6.ls: domain 1 of 1, from 234 to 328: score 67.8, E = 3.2e-17 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.....Gqpls P + p + V+ Ge+++f C+V G P P+++W K +++++ ++ fk05082 234 PALLNNPVHQSVTMGETVSFLCDVVGRPRPEITWEKQledreNVVMR 280 svllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasa + + r +v++++ ++ L+I+n+q D+G+YtC+A+N aG a++ fk05082 281 P---NHVRGNVVVTN---IAQLVIYNAQLQDAGIYTCTARNVAGVLRADF 324 eLtV<-* L V fk05082 325 PLSV 328 PF07686.7.ls: domain 1 of 1, from 234 to 330: score 15.1, E = 0.0015 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + + p + +v G++v++ C + + + fk05082 234 PALLNN--PV------------HQSVTMGETVSFLCDVV---GRP-- 261 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +i+W + q ++ + + ++ +g+v fk05082 262 --RP-EITWEK-QLEDRENVVMR----------------PNHVRGNVV-- 289 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* + + L I n+ql D G+Y+C n ++ +V+ fk05082 290 ---VTNIAQLVIYNAQLQDAGIYTCTARNVAGVLRADFPLSVVR 330 PF00047.15.fs: domain 1 of 1, from 248 to 313: score 29.2, E = 3e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v++ C v g p +++tW ++ + ++ v +++++ +++ fk05082 248 GETVSFLCDV--VGRPRPEITWEKQLEdREnVVMRPNHVRGNVVVTN 292 t.sLtitnvtpeDggtYtCvv<-* + L+i n++ +D+g+YtC++ fk05082 293 IaQLVIYNAQLQDAGIYTCTA 313 PF00047.15.ls: domain 1 of 1, from 248 to 313: score 31.1, E = 3.5e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+v++ C v g p +++tW ++ + ++ v +++++ +++ fk05082 248 GETVSFLCDV--VGRPRPEITWEKQLEdREnVVMRPNHVRGNVVVTN 292 t.sLtitnvtpeDggtYtCvv<-* + L+i n++ +D+g+YtC++ fk05082 293 IaQLVIYNAQLQDAGIYTCTA 313 PF00014.13.ls: domain 1 of 2, from 351 to 403: score 64.1, E = 4.2e-16 *->iCslPpdsGpCkgsilpRyyYnpstgqCepFiYgGCgGNaNNFetle C++Ppds C+ + +R++++++ ++C +F++g C N N+Fet+e fk05082 351 ECLKPPDSEDCGEEQ-TRWHFDAQANNCLTFTFGHCHRNLNHFETYE 396 eCertCg<-* +C+ +C+ fk05082 397 ACMLACM 403 PF00014.13.fs: domain 1 of 2, from 351 to 403: score 62.1, E = 3.2e-21 *->iCslPpdsGpCkgsilpRyyYnpstgqCepFiYgGCgGNaNNFetle C++Ppds C+ + +R++++++ ++C +F++g C N N+Fet+e fk05082 351 ECLKPPDSEDCGEEQ-TRWHFDAQANNCLTFTFGHCHRNLNHFETYE 396 eCertCg<-* +C+ +C+ fk05082 397 ACMLACM 403 PF00014.13.ls: domain 2 of 2, from 409 to 461: score 105.9, E = 1.1e-28 *->iCslPpdsGpCkgsilpRyyYnpstgqCepFiYgGCgGNaNNFetle +CslP+ +GpCk++ pR+ Yn++tgqC++F+YgGC+GN+NNFe++e fk05082 409 ACSLPALQGPCKAYA-PRWAYNSQTGQCQSFVYGGCEGNGNNFESRE 454 eCertCg<-* +Ce+ C fk05082 455 ACEESCP 461 PF00014.13.fs: domain 2 of 2, from 409 to 461: score 103.9, E = 8.8e-36 *->iCslPpdsGpCkgsilpRyyYnpstgqCepFiYgGCgGNaNNFetle +CslP+ +GpCk++ pR+ Yn++tgqC++F+YgGC+GN+NNFe++e fk05082 409 ACSLPALQGPCKAYA-PRWAYNSQTGQCQSFVYGGCEGNGNNFESRE 454 eCertCg<-* +Ce+ C fk05082 455 ACEESCP 461 //