hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-03101197/chunk_1/iprscan-20080811-03101197.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk05451 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 522.3 5e-154 1 PF07714.7.fs Protein tyrosine kinase 520.4 1.9e-153 1 PF00069.15.fs Protein kinase domain 133.0 1.1e-37 1 PF00069.15.ls Protein kinase domain 134.9 2e-37 1 PF00041.11.fs Fibronectin type III domain 46.6 9.7e-13 3 PF00041.11.ls Fibronectin type III domain 20.4 0.0014 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00041.11.fs 1/3 85 122 .. 1 37 [. 24.2 2.5e-06 PF00041.11.ls 1/1 305 388 .. 1 84 [] 20.4 0.0014 PF07714.7.fs 1/1 474 741 .. 1 272 [] 520.4 1.9e-153 PF00069.15.fs 1/1 474 741 .. 1 287 [] 133.0 1.1e-37 PF00069.15.ls 1/1 474 741 .. 1 287 [] 134.9 2e-37 PF07714.7.ls 1/1 474 741 .. 1 272 [] 522.3 5e-154 Alignments of top-scoring domains: PF00041.11.fs: domain 1 of 3, from 85 to 122: score 24.2, E = 2.5e-06 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevty<-* Ps P ++ +++s+ + l W+pP+++ng it+Y v + fk05451 85 PSVPLDPISVSNSSSQIILKWKPPSdPNGNITHYLVFW 122 PF00041.11.ls: domain 1 of 1, from 305 to 388: score 20.4, E = 0.0014 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. +++t +++ + ++l W+ P+++ng i Yev yR +++e fk05451 305 VGPVTHEIFEN---NVVHLMWQEPKePNGLIVLYEVSYR-RYGDEEl 347 ..wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++++ ++ + l+gL Pg +Y+vr++A + +G+G ++ fk05451 348 hlCVSRKHFALERGCRLRGLSPG-NYSVRIRATSLAGnGSWT 388 PF07714.7.fs: domain 1 of 1, from 474 to 741: score 520.4, E = 1.9e-153 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei ++l+++LG+G+FG+Vy+G +++ +++ e+ VAVKt++e +as +e fk05451 474 ITLLRELGQGSFGMVYEGNARDiIKGEAETRVAVKTVNE-SASLRE- 518 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd r +Fl+EAs+Mk + ++++VrLlGv++k g+P ++V+E+m++Gd fk05451 519 -RIEFLNEASVMKGF-TCHHVVRLLGVVSK-GQP----TLVVMELMAHGD 561 LldfLrkhr.......egrpLtlkdLlsfalQiAkGMeYLesknfvHRDL L+++Lr+ r++ +++++++p+tl++++++a++iA+GM+YL +k+fvHRDL fk05451 562 LKSYLRSLRpeaennpGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDL 611 AARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslk AARNc+V+++++VKI+DFG++Rdiy++dyY rk+g+g lPv+WmAPEslk fk05451 612 AARNCMVAHDFTVKIGDFGMTRDIYETDYY-RKGGKGLLPVRWMAPESLK 660 ygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr +g+Ft+ SD WSFGV+LWEi +l eqP Y+g+sne+vl+++ +dG+ L++ fk05451 661 DGVFTTSSDMWSFGVVLWEITSLAEQP-YQGLSNEQVLKFV-MDGGYLDQ 708 PenCPdelYdlMlqCWaedPedRPtFselveeL<-* P+nCP+ + dlM++CW+++P++RPtF e+v+ L fk05451 709 PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 741 PF00069.15.fs: domain 1 of 1, from 474 to 741: score 133.0, E = 1.1e-37 *->yelleklGsGsfGtVyk..akhkgtgk...iVAvKiikkrkekskkd ++ll+ lG+GsfG Vy+++a+++ g+ +++VAvK+++ + ++ fk05451 474 ITLLRELGQGSFGMVYEgnARDIIKGEaetRVAVKTVNESASLR-ER 519 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf ++ ++ E++++k + + ++vrl++v+ ++ +V+E++ +G dL+ fk05451 520 IEFLN--EASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHG----DLK 563 dyls..e..trrkgpll.fsedeakkialQilrgleYLHsngiiHRDLKP +yl++ +++++++ + + + +e + +a +i+ g++YL +++++HRDL fk05451 564 SYLRslRpeAENNPGRPpPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAA 613 eNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTp..wYmAPEv N+++ ++ +v Ki+DFG + + ++ + ++ G ++ ++mAPE fk05451 614 RNCMVAHDFTV----KIGDFGMTRDI-YeTDYyRKGGKGLLpvRWMAPES 658 llggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkil l+ + +t++D+WS+Gv+l+e + + P++g s+ l+ + + fk05451 659 LK-DGVFTTSSDMWSFGVVLWEITSlAEQPYQGL---SnEQVLKFVMDGG 704 gpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeei + + + ++p e dL++ c++++P+ R+t+ ei fk05451 705 YLDQPDNCP-----------------ERVTDLMRMCWQFNPKMRPTFLEI 737 lqHPwf<-* ++ + fk05451 738 VNL--L 741 PF00069.15.ls: domain 1 of 1, from 474 to 741: score 134.9, E = 2e-37 *->yelleklGsGsfGtVyk..akhkgtgk...iVAvKiikkrkekskkd ++ll+ lG+GsfG Vy+++a+++ g+ +++VAvK+++ + ++ fk05451 474 ITLLRELGQGSFGMVYEgnARDIIKGEaetRVAVKTVNESASLR-ER 519 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf ++ ++ E++++k + + ++vrl++v+ ++ +V+E++ +G dL+ fk05451 520 IEFLN--EASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHG----DLK 563 dyls..e..trrkgpll.fsedeakkialQilrgleYLHsngiiHRDLKP +yl++ +++++++ + + + +e + +a +i+ g++YL +++++HRDL fk05451 564 SYLRslRpeAENNPGRPpPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAA 613 eNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTp..wYmAPEv N+++ ++ +v Ki+DFG + + ++ + ++ G ++ ++mAPE fk05451 614 RNCMVAHDFTV----KIGDFGMTRDI-YeTDYyRKGGKGLLpvRWMAPES 658 llggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkil l+ + +t++D+WS+Gv+l+e + + P++g s+ l+ + + fk05451 659 LK-DGVFTTSSDMWSFGVVLWEITSlAEQPYQGL---SnEQVLKFVMDGG 704 gpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeei + + + ++p e dL++ c++++P+ R+t+ ei fk05451 705 YLDQPDNCP-----------------ERVTDLMRMCWQFNPKMRPTFLEI 737 lqHPwf<-* ++ + fk05451 738 VNL--L 741 PF07714.7.ls: domain 1 of 1, from 474 to 741: score 522.3, E = 5e-154 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei ++l+++LG+G+FG+Vy+G +++ +++ e+ VAVKt++e +as +e fk05451 474 ITLLRELGQGSFGMVYEGNARDiIKGEAETRVAVKTVNE-SASLRE- 518 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd r +Fl+EAs+Mk + ++++VrLlGv++k g+P ++V+E+m++Gd fk05451 519 -RIEFLNEASVMKGF-TCHHVVRLLGVVSK-GQP----TLVVMELMAHGD 561 LldfLrkhr.......egrpLtlkdLlsfalQiAkGMeYLesknfvHRDL L+++Lr+ r++ +++++++p+tl++++++a++iA+GM+YL +k+fvHRDL fk05451 562 LKSYLRSLRpeaennpGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDL 611 AARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslk AARNc+V+++++VKI+DFG++Rdiy++dyY rk+g+g lPv+WmAPEslk fk05451 612 AARNCMVAHDFTVKIGDFGMTRDIYETDYY-RKGGKGLLPVRWMAPESLK 660 ygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr +g+Ft+ SD WSFGV+LWEi +l eqP Y+g+sne+vl+++ +dG+ L++ fk05451 661 DGVFTTSSDMWSFGVVLWEITSLAEQP-YQGLSNEQVLKFV-MDGGYLDQ 708 PenCPdelYdlMlqCWaedPedRPtFselveeL<-* P+nCP+ + dlM++CW+++P++RPtF e+v+ L fk05451 709 PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL 741 //