hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-03101197/chunk_1/iprscan-20080811-03101197.nocrc
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Query sequence: fk05451
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 477.2   7.9e-139   1
SM00220                                                 157.3    1.5e-42   1
SM00060                                                  65.9      5e-15   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00060    1/2      85   282 ..     1    69 []    37.9  1.4e-06
SM00060    2/2     302   385 ..     1    69 []    28.0   0.0013
SM00219    1/1     474   741 ..     1   280 []   477.2 7.9e-139
SM00220    1/1     474   749 ..     1   231 []   157.3  1.5e-42

Alignments of top-scoring domains:
SM00060: domain 1 of 2, from 85 to 282: score 37.9, E = 1.4e-06
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                      P+ P +p  ++v++ +s       ++ l+W+pP++++++i++Y + +
     fk05451    85    PSVPLDP--ISVSNSSS-------QIILKWKPPsdpngnITHYLvfw 122  

                   ..................................................
                   +++ ++++  + +   ++ + ++++++++ +++++++ ++++ +++ ++ 
     fk05451   123 erqaedselfeldyclkglklpsrtwsppfesedsqkhnqseyedsagec 172  

                   ..................................................
                    + ++++++  ++ ++++ +++ ++   +++ ++++++++++ +++++++
     fk05451   173 cscpktdsqilkeleessfrktfedylhnvvfvprpsrkrrslgdvgnvt 222  

                   ...................................ytltgLkPgaepwte
                   + ++++   ++++++++++++++ ++ ++++++++ +++gL+      t 
     fk05451   223 vavptvaafpntsstsvptspeehrpfekvvnkesLVISGLRHF----TG 268  

                   YefrVrAvngndaGeg<-*
                   Y++ ++A n   + +    
     fk05451   269 YRIELQACNQ--DTPE    282  

SM00060: domain 2 of 2, from 302 to 385: score 28.0, E = 0.0013
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                       + ++    ++ +   ++       v+l W++P+++++ iv Y+++ 
     fk05451   302    DDIVGP---VTHEIFENN------VVHLMWQEPkepnglIVLYEvsy 339  

                   ......................ytltgLkPgaepwteYefrVrAvngnda
                   ++ ++++    ++++    +++++l+gL+Pg     +Y++r+rA +   a
     fk05451   340 rrygdeelhlcvsrkhfalergCRLRGLSPG-----NYSVRIRATSL--A 382  

                   Geg<-*
                   G g   
     fk05451   383 GNG    385  

SM00219: domain 1 of 1, from 474 to 741: score 477.2, E = 7.9e-139
                   *->ltlgkkLGeGaFGeVykGtlk........ieVAVKtLkeda....ke
                      +tl+++LG G FG Vy+G +++  +++ ++ VAVKt++e+a+ +++ 
     fk05451   474    ITLLRELGQGSFGMVYEGNARdiikgeaeTRVAVKTVNESAslreRI 520  

                   eFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGd
                   eFl+Ea++Mk +     ++V+LlGv++++       +P ++vmE+m++Gd
     fk05451   521 EFLNEASVMKGF--TCHHVVRLLGVVSKG-------QPTLVVMELMAHGD 561  

                   LldyLrknrpk.........lslsdLlsfAlQIAkGMeYLesknfvHRDL
                   L++yLr+ rp+ ++++++++ +l++++++A  IA+GM+YL  k+fvHRDL
     fk05451   562 LKSYLRSLRPEaennpgrppPTLQEMIQMAAEIADGMAYLNAKKFVHRDL 611  

                   AARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllP
                   AARNc+v+++++vKI+DFG++Rd+y+        dyYrk    ggk+llP
     fk05451   612 AARNCMVAHDFTVKIGDFGMTRDIYET-------DYYRK----GGKGLLP 650  

                   irWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsnee
                   +rWmAPEslkdg+Ft+ SD WSFGV+LWEi +l eqPY g     +sne+
     fk05451   651 VRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQG-----LSNEQ 695  

                   vleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel
                   vl+++++G++l++P+n        CP+ + dlM++CW+++P++RPtF e+
     fk05451   696 VLKFVMDGGYLDQPDN--------CPERVTDLMRMCWQFNPKMRPTFLEI 737  

                   verl<-*
                   v +l   
     fk05451   738 VNLL    741  

SM00220: domain 1 of 1, from 474 to 749: score 157.3, E = 1.5e-42
                   *->YellkklGkGaFGkVylardkk.....tgrlvAiKvik........e
                       +ll++lG+G+FG Vy +  ++  +++   +vA+K ++++ + ++++
     fk05451   474    ITLLRELGQGSFGMVYEGNARDiikgeAETRVAVKTVNesaslrerI 520  

                   rilrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkk
                    +l+E +++k   + ++V+L++v   ++   +VmE++ +  GdL+++l++
     fk05451   521 EFLNEASVMKGfTCHHVVRLLGVVSKgQPTLVVMELMAH--GDLKSYLRS 568  

                   rgrrglrkvl....sE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLL
                    +++  + + +++++ +e   ++++i+++++YL  ++++HRDL   N ++
     fk05451   569 LRPEAENNPGrpppTLqEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMV 618  

                   ds..hvKlaDFGlArql.........ttfvGTpeYmAPEvl...gYgkpa
                    ++ +vK++DFG+ r + +++  +++        +mAPE l+++ +++ +
     fk05451   619 AHdfTVKIGDFGMTRDIyetdyyrkgGKGLLPVRWMAPESLkdgVFTT-S 667  

                   vDiWSlGcilyEllt.GkpPFp..qldlifkkig...........Speak
                   +D+WS+G++l+E  +  + P+++   ++++k ++++++ + +++ ++ + 
     fk05451   668 SDMWSFGVVLWEITSlAEQPYQglSNEQVLKFVMdggyldqpdncPERVT 717  

                   dLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   dL++ +++++P+ R+t  e+ +  l+  +HP f   
     fk05451   718 DLMRMCWQFNPKMRPTFlEIVN-LLKDDLHPSF    749  

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