# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofk05467.fasta.nr -Q fk05467.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fk05467, 490 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8951872 sequences Expectation_n fit: rho(ln(x))= 6.4057+/-0.000212; mu= 7.3754+/- 0.012 mean_var=164.5099+/-31.518, 0's: 23 Z-trim: 86 B-trim: 105 in 1/66 Lambda= 0.099995 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COU ( 423) 2937 435.5 1.4e-119 gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=C ( 424) 2925 433.8 4.8e-119 gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=CO ( 422) 2912 431.9 1.8e-118 gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens] ( 418) 2908 431.4 2.6e-118 gi|466468|gb|AAA19853.1| COUP-TFI gi|80478748| ( 420) 2897 429.8 7.8e-118 gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI ( 419) 2871 426.0 1.1e-116 gi|109078079|ref|XP_001089115.1| PREDICTED: nuclea ( 552) 2761 410.3 7.5e-112 gi|114599158|ref|XP_517657.2| PREDICTED: hypotheti ( 422) 2732 406.0 1.2e-110 gi|224088907|ref|XP_002189105.1| PREDICTED: nuclea ( 421) 2660 395.6 1.5e-107 gi|73952057|ref|XP_848884.1| PREDICTED: similar to ( 411) 2639 392.5 1.2e-106 gi|149264525|ref|XP_001475509.1| PREDICTED: simila ( 904) 2624 390.8 9.2e-106 gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcrip ( 411) 2559 381.0 3.7e-103 gi|148705178|gb|EDL37125.1| nuclear receptor subfa ( 416) 2551 379.8 8.3e-103 gi|138519913|gb|AAI35590.1| Nr2f1 protein [Xenopus ( 410) 2546 379.1 1.4e-102 gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=N ( 411) 2543 378.7 1.8e-102 gi|34194058|gb|AAH56574.1| Nuclear receptor subfam ( 410) 2526 376.2 1e-101 gi|123233077|emb|CAM16573.1| nuclear receptor subf ( 410) 2525 376.1 1.1e-101 gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus ( 404) 2497 372.0 1.8e-100 gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=C ( 414) 2460 366.7 7.4e-99 gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COU ( 414) 2459 366.6 8.2e-99 gi|194038402|ref|XP_001928395.1| PREDICTED: simila ( 414) 2459 366.6 8.2e-99 gi|60654339|gb|AAX29860.1| nuclear receptor subfam ( 415) 2459 366.6 8.2e-99 gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP ( 414) 2457 366.3 1e-98 gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus] ( 414) 2453 365.7 1.5e-98 gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus ( 405) 2387 356.2 1.1e-95 gi|224062719|ref|XP_002199778.1| PREDICTED: putati ( 410) 2387 356.2 1.1e-95 gi|197129927|gb|ACH46425.1| putative nuclear recep ( 410) 2386 356.0 1.2e-95 gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=CO ( 410) 2383 355.6 1.6e-95 gi|149410809|ref|XP_001508281.1| PREDICTED: simila ( 411) 2382 355.5 1.8e-95 gi|163916021|gb|AAI57200.1| Nr2f2 protein [Xenopus ( 408) 2377 354.7 2.9e-95 gi|73951117|ref|XP_858860.1| PREDICTED: similar to ( 414) 2374 354.3 4e-95 gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed reti ( 405) 2372 354.0 4.8e-95 gi|1311663|gb|AAA99309.1| Drosophila seven-up homo ( 422) 2351 351.0 4e-94 gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma ( 443) 2294 342.8 1.2e-91 gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio r ( 428) 2274 339.9 9e-91 gi|32454395|gb|AAP82999.1| ovalbumin upstream prom ( 339) 2246 335.7 1.3e-89 gi|196123801|gb|ACG70189.1| COUP protein [Saccoglo ( 435) 2216 331.5 3e-88 gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full= ( 389) 2213 331.1 3.8e-88 gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio r ( 388) 2196 328.6 2.1e-87 gi|64643|emb|CAA44806.1| Coup transcription factor ( 397) 2130 319.1 1.5e-84 gi|193892337|gb|EDV91203.1| GH17319 [Drosophila gr ( 542) 2124 318.4 3.4e-84 gi|190652146|gb|EDV49401.1| GG18706 [Drosophila er ( 543) 2114 316.9 9.3e-84 gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Ste ( 543) 2114 316.9 9.3e-84 gi|12484038|gb|AAG53940.1| nuclear hormone recepto ( 493) 2112 316.6 1.1e-83 gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=N ( 403) 2099 314.6 3.5e-83 gi|76364250|gb|ABA41639.1| COUP transcription fact ( 336) 2096 314.1 4.1e-83 gi|21744271|gb|AAM76194.1| RE08410p [Drosophila me ( 543) 2098 314.6 4.6e-83 gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx ( 421) 2089 313.2 9.7e-83 gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear ho ( 419) 2087 312.9 1.2e-82 gi|198132680|gb|EAL28648.2| GA11038 [Drosophila ps ( 777) 2089 313.5 1.4e-82 >>gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP tr (423 aa) initn: 2937 init1: 2937 opt: 2937 Z-score: 2303.9 bits: 435.5 E(): 1.4e-119 Smith-Waterman score: 2937; 100.000% identity (100.000% similar) in 423 aa overlap (68-490:1-423) 40 50 60 70 80 90 fk0546 PFPFPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAA :::::::::::::::::::::::::::::: gi|116 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAA 10 20 30 100 110 120 130 140 150 fk0546 RGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 RGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG 40 50 60 70 80 90 160 170 180 190 200 210 fk0546 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG 100 110 120 130 140 150 220 230 240 250 260 270 fk0546 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP 160 170 180 190 200 210 280 290 300 310 320 330 fk0546 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP 220 230 240 250 260 270 340 350 360 370 380 390 fk0546 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 280 290 300 310 320 330 400 410 420 430 440 450 fk0546 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 340 350 360 370 380 390 460 470 480 490 fk0546 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS ::::::::::::::::::::::::::::::::: gi|116 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS 400 410 420 >>gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP (424 aa) initn: 2687 init1: 2687 opt: 2925 Z-score: 2294.5 bits: 433.8 E(): 4.8e-119 Smith-Waterman score: 2925; 99.764% identity (99.764% similar) in 424 aa overlap (68-490:1-424) 40 50 60 70 80 90 fk0546 PFPFPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAA :::::::::::::::::::::::::::::: gi|107 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAA 10 20 30 100 110 120 130 140 150 fk0546 RGGGGGAGEQQQQ-AGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVC ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|107 RGGGGGAGEQQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVC 40 50 60 70 80 90 160 170 180 190 200 210 fk0546 GDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|107 GDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKV 100 110 120 130 140 150 220 230 240 250 260 270 fk0546 GMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|107 GMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQ 160 170 180 190 200 210 280 290 300 310 320 330 fk0546 PNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|107 PNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSM 220 230 240 250 260 270 340 350 360 370 380 390 fk0546 PLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|107 PLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT 280 290 300 310 320 330 400 410 420 430 440 450 fk0546 SDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|107 SDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLF 340 350 360 370 380 390 460 470 480 490 fk0546 FVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS :::::::::::::::::::::::::::::::::: gi|107 FVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS 400 410 420 >>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP t (422 aa) initn: 2674 init1: 2674 opt: 2912 Z-score: 2284.4 bits: 431.9 E(): 1.8e-118 Smith-Waterman score: 2912; 99.527% identity (99.527% similar) in 423 aa overlap (68-490:1-422) 40 50 60 70 80 90 fk0546 PFPFPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAA :::::::::::::::::::::::::::::: gi|250 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAA 10 20 30 100 110 120 130 140 150 fk0546 RGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG :::::::::::: ::::::::::::::::::::::: ::::::::::::::::::::::: gi|250 RGGGGGAGEQQQ-AGSGAPHTPQTPGQPGAPATPGTQGDKGQGPPGSGQSQQHIECVVCG 40 50 60 70 80 160 170 180 190 200 210 fk0546 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG 90 100 110 120 130 140 220 230 240 250 260 270 fk0546 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP 150 160 170 180 190 200 280 290 300 310 320 330 fk0546 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP 210 220 230 240 250 260 340 350 360 370 380 390 fk0546 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 270 280 290 300 310 320 400 410 420 430 440 450 fk0546 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 330 340 350 360 370 380 460 470 480 490 fk0546 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS ::::::::::::::::::::::::::::::::: gi|250 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS 390 400 410 420 >>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens] gi (418 aa) initn: 2908 init1: 2908 opt: 2908 Z-score: 2281.4 bits: 431.4 E(): 2.6e-118 Smith-Waterman score: 2908; 100.000% identity (100.000% similar) in 418 aa overlap (73-490:1-418) 50 60 70 80 90 100 fk0546 SQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGG :::::::::::::::::::::::::::::: gi|301 SSWRDPQDDVAGGNPGGPNPAAQAARGGGG 10 20 30 110 120 130 140 150 160 fk0546 GAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|301 GAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSG 40 50 60 70 80 90 170 180 190 200 210 220 fk0546 KHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|301 KHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREA 100 110 120 130 140 150 230 240 250 260 270 280 fk0546 VQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|301 VQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMG 160 170 180 190 200 210 290 300 310 320 330 340 fk0546 IENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|301 IENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAP 220 230 240 250 260 270 350 360 370 380 390 400 fk0546 LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|301 LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGL 280 290 300 310 320 330 410 420 430 440 450 460 fk0546 SDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|301 SDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG 340 350 360 370 380 390 470 480 490 fk0546 KTPIETLIRDMLLSGSSFNWPYMSIQCS :::::::::::::::::::::::::::: gi|301 KTPIETLIRDMLLSGSSFNWPYMSIQCS 400 410 >>gi|466468|gb|AAA19853.1| COUP-TFI gi|80478748|gb|A (420 aa) initn: 2680 init1: 2680 opt: 2897 Z-score: 2272.8 bits: 429.8 E(): 7.8e-118 Smith-Waterman score: 2897; 99.054% identity (99.291% similar) in 423 aa overlap (68-490:1-420) 40 50 60 70 80 90 fk0546 PFPFPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAA :::::::::::::::::::::::::::::: gi|466 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAA 10 20 30 100 110 120 130 140 150 fk0546 RGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG :::::: .:::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 RGGGGG---EQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG 40 50 60 70 80 160 170 180 190 200 210 fk0546 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG 90 100 110 120 130 140 220 230 240 250 260 270 fk0546 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP 150 160 170 180 190 200 280 290 300 310 320 330 fk0546 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP 210 220 230 240 250 260 340 350 360 370 380 390 fk0546 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 270 280 290 300 310 320 400 410 420 430 440 450 fk0546 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|466 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 330 340 350 360 370 380 460 470 480 490 fk0546 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS ::::::::::::::::::::::::::::::::: gi|466 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS 390 400 410 420 >>gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI (419 aa) initn: 1723 init1: 1723 opt: 2871 Z-score: 2252.5 bits: 426.0 E(): 1.1e-116 Smith-Waterman score: 2871; 98.582% identity (99.054% similar) in 423 aa overlap (68-490:1-419) 40 50 60 70 80 90 fk0546 PFPFPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAA :::::::::::::::::::::::::::::: gi|506 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAA 10 20 30 100 110 120 130 140 150 fk0546 RGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG :::::: .:::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 RGGGGG---EQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG 40 50 60 70 80 160 170 180 190 200 210 fk0546 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG 90 100 110 120 130 140 220 230 240 250 260 270 fk0546 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP 150 160 170 180 190 200 280 290 300 310 320 330 fk0546 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP 210 220 230 240 250 260 340 350 360 370 380 390 fk0546 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS :::: .:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 LHVA-VLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 270 280 290 300 310 320 400 410 420 430 440 450 fk0546 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 330 340 350 360 370 380 460 470 480 490 fk0546 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS ::::::::::::::::::::::::::::::::: gi|506 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS 390 400 410 >>gi|109078079|ref|XP_001089115.1| PREDICTED: nuclear re (552 aa) initn: 2699 init1: 2699 opt: 2761 Z-score: 2165.4 bits: 410.3 E(): 7.5e-112 Smith-Waterman score: 2761; 87.083% identity (90.000% similar) in 480 aa overlap (11-490:81-552) 10 20 30 40 fk0546 RRQRRRRRRQRPVSGSGSAPATPGRPAGPPPPPPPPFPFP : .:...: : . ::. : : : gi|109 PRHPRALIAAGSLAQRPARLTALPALPSPARAPAGTAAAAARAA-PASARAPAAAPTPAR 60 70 80 90 100 50 60 70 80 90 100 fk0546 FPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGG :. ::::: . :: : : :. : :. . .:: : .:.: ::: gi|109 TPA-RARAPPAAL-AAAAPAAAPAAPAAATSSSAAAAAASALAGFLYVG---SASALRGG 110 120 130 140 150 160 110 120 130 140 150 160 fk0546 GGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKS : ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 G--AGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKS 170 180 190 200 210 220 170 180 190 200 210 220 fk0546 SGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRR 230 240 250 260 270 280 230 240 250 260 270 280 fk0546 EAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNI 290 300 310 320 330 340 290 300 310 320 330 340 fk0546 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 350 360 370 380 390 400 350 360 370 380 390 400 fk0546 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDAC 410 420 430 440 450 460 410 420 430 440 450 460 fk0546 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 470 480 490 500 510 520 470 480 490 fk0546 VGKTPIETLIRDMLLSGSSFNWPYMSIQCS :::::::::::::::::::::::::::::: gi|109 VGKTPIETLIRDMLLSGSSFNWPYMSIQCS 530 540 550 >>gi|114599158|ref|XP_517657.2| PREDICTED: hypothetical (422 aa) initn: 2732 init1: 2732 opt: 2732 Z-score: 2144.1 bits: 406.0 E(): 1.2e-110 Smith-Waterman score: 2732; 100.000% identity (100.000% similar) in 393 aa overlap (68-460:1-393) 40 50 60 70 80 90 fk0546 PFPFPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAA :::::::::::::::::::::::::::::: gi|114 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAA 10 20 30 100 110 120 130 140 150 fk0546 RGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG 40 50 60 70 80 90 160 170 180 190 200 210 fk0546 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG 100 110 120 130 140 150 220 230 240 250 260 270 fk0546 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP 160 170 180 190 200 210 280 290 300 310 320 330 fk0546 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP 220 230 240 250 260 270 340 350 360 370 380 390 fk0546 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 280 290 300 310 320 330 400 410 420 430 440 450 fk0546 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 340 350 360 370 380 390 460 470 480 490 fk0546 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS ::: gi|114 VRLALLITPTVAELPPVSSAIPQNKSPECLCK 400 410 420 >>gi|224088907|ref|XP_002189105.1| PREDICTED: nuclear re (421 aa) initn: 2796 init1: 1716 opt: 2660 Z-score: 2088.0 bits: 395.6 E(): 1.5e-107 Smith-Waterman score: 2660; 92.019% identity (95.305% similar) in 426 aa overlap (68-490:1-421) 40 50 60 70 80 90 fk0546 PFPFPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAA-QA ::::::::::::.:::::.:.:::::: : gi|224 MAMVVSSWRDPQEDVAGGTPSGPNPAATQP 10 20 30 100 110 120 130 140 150 fk0546 ARGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVC :: . :::..:..:::::::.::: :.::::::::: : :::::::::::::: gi|224 AR-----EQQPQQQGSSATPHTPQTPSQPGPPSTPGTAGDKGAGQQGSGQSQQHIECVVC 40 50 60 70 80 160 170 180 190 200 210 fk0546 GDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 GDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKV 90 100 110 120 130 140 220 230 240 250 260 270 fk0546 GMRREAVQRGRM--PPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQC ::::::.:.: . : : ::::::::::::::::::::::::::::::::::::::::: gi|224 GMRREAIQQGLYIFPCTXXNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQC 150 160 170 180 190 200 280 290 300 310 320 330 fk0546 MQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQC ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|224 MQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQC 210 220 230 240 250 260 340 350 360 370 380 390 fk0546 SMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 SMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 270 280 290 300 310 320 400 410 420 430 440 450 fk0546 FTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|224 FTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQ 330 340 350 360 370 380 460 470 480 490 fk0546 LFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS :::::::::::::::::::::::::::::::::::: gi|224 LFFVRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS 390 400 410 420 >>gi|73952057|ref|XP_848884.1| PREDICTED: similar to COU (411 aa) initn: 2637 init1: 2637 opt: 2639 Z-score: 2071.7 bits: 392.5 E(): 1.2e-106 Smith-Waterman score: 2725; 94.090% identity (95.981% similar) in 423 aa overlap (68-490:1-411) 40 50 60 70 80 90 fk0546 PFPFPSQRARAPRGPRRAARLPPALPGPKDMAMVVSSWRDPQDDVAGGNPGGPNPAAQAA ::::::::::::: :..:..:.: gi|739 MAMVVSSWRDPQDFWPGATPAAPTPQ---- 10 20 100 110 120 130 140 150 fk0546 RGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG ... :::::::::::::::::::::::::::::::::::::::::::::::: gi|739 --------RKRPQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCG 30 40 50 60 70 160 170 180 190 200 210 fk0546 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVG 80 90 100 110 120 130 220 230 240 250 260 270 fk0546 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQP 140 150 160 170 180 190 280 290 300 310 320 330 fk0546 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP 200 210 220 230 240 250 340 350 360 370 380 390 fk0546 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 260 270 280 290 300 310 400 410 420 430 440 450 fk0546 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 320 330 340 350 360 370 460 470 480 490 fk0546 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS ::::::::::::::::::::::::::::::::: gi|739 VRLVGKTPIETLIRDMLLSGSSFNWPYMSIQCS 380 390 400 410 490 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 12:02:06 2009 done: Thu Jun 18 12:05:12 2009 Total Scan time: 1132.440 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]