hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12053314/chunk_1/iprscan-20090618-12053314.nocrc
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Query sequence: fk05467
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00104.20.fs Ligand-binding domain of nuclear hormon   221.7    5.6e-66   1
PF00104.20.ls Ligand-binding domain of nuclear hormon   223.6    4.1e-64   1
PF00105.9.fs  Zinc finger, C4 type (two domains)        189.1    4.2e-56   1
PF00105.9.ls  Zinc finger, C4 type (two domains)        191.1    2.4e-54   1
PF08420.1.ls  Zinc finger, C4 type, C-terminal          173.7    4.3e-49   1
PF08420.1.fs  Zinc finger, C4 type, C-terminal          171.8    1.6e-48   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00105.9.ls    1/1     151   226 ..     1    77 []   191.1  2.4e-54
PF00105.9.fs    1/1     151   226 ..     1    77 []   189.1  4.2e-56
PF08420.1.fs    1/1     227   289 ..     1    69 []   171.8  1.6e-48
PF08420.1.ls    1/1     227   289 ..     1    69 []   173.7  4.3e-49
PF00104.20.fs   1/1     291   473 ..     1   198 []   221.7  5.6e-66
PF00104.20.ls   1/1     291   473 ..     1   198 []   223.6  4.1e-64

Alignments of top-scoring domains:
PF00105.9.ls: domain 1 of 1, from 151 to 226: score 191.1, E = 2.4e-54
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
                      + C+VCGDk+SG+HYG +TCEGCK+FF+RS+++nl+ Y+C++n++C+
     fk05467   151    IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLT-YTCRANRNCP 196  

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   Id+++Rn+CQyCRLkKCL VGM++eaV++g   
     fk05467   197 IDQHHRNQCQYCRLKKCLKVGMRREAVQRG    226  

PF00105.9.fs: domain 1 of 1, from 151 to 226: score 189.1, E = 4.2e-56
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv
                      + C+VCGDk+SG+HYG +TCEGCK+FF+RS+++nl+ Y+C++n++C+
     fk05467   151    IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLT-YTCRANRNCP 196  

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   Id+++Rn+CQyCRLkKCL VGM++eaV++g   
     fk05467   197 IDQHHRNQCQYCRLKKCLKVGMRREAVQRG    226  

PF08420.1.fs: domain 1 of 1, from 227 to 289: score 171.8, E = 1.6e-48
                   *->RipptQppplspgqyalnggDpvtglNGhsYLSgfISLLLRAEPYPT
                      R+pptQp+p   gqyal++gDp   lNGh+YLSg+ISLLLRAEPYPT
     fk05467   227    RMPPTQPNP---GQYALTNGDP---LNGHCYLSGYISLLLRAEPYPT 267  

                   sRYgqqcmqpnniMGIeNICEL<-*
                   sRYg+qcmqpnniMGIeNICEL   
     fk05467   268 SRYGSQCMQPNNIMGIENICEL    289  

PF08420.1.ls: domain 1 of 1, from 227 to 289: score 173.7, E = 4.3e-49
                   *->RipptQppplspgqyalnggDpvtglNGhsYLSgfISLLLRAEPYPT
                      R+pptQp+p   gqyal++gDp   lNGh+YLSg+ISLLLRAEPYPT
     fk05467   227    RMPPTQPNP---GQYALTNGDP---LNGHCYLSGYISLLLRAEPYPT 267  

                   sRYgqqcmqpnniMGIeNICEL<-*
                   sRYg+qcmqpnniMGIeNICEL   
     fk05467   268 SRYGSQCMQPNNIMGIENICEL    289  

PF00104.20.fs: domain 1 of 1, from 291 to 473: score 221.7, E = 5.6e-66
                   *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
                      +r l+++vewa+++P+F +L + DQ++LL+  w+el++L++a++s++
     fk05467   291    ARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP 337  

                   ek.elllfpdggdif.eeqlr.ggl.elvrilqelv.plreLkldeeEya
                   +  + ll+  g +  ++++ r   + +++ri+qe v++l++L++d +Ey+
     fk05467   338 LHvAPLLAAAGLHASpMSADRvVAFmDHIRIFQEQVeKLKALHVDSAEYS 387  

                   lLkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspq
                   +LkAivLf++d++g  l++ +++e+lqek ++aL eY++++y   p+   
     fk05467   388 CLKAIVLFTSDACG--LSDAAHIESLQEKSQCALEEYVRSQY---PN--- 429  

                   dprgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLld
                   +p  + RF+kLLl+Lp+lr++s s +ie+lff++l g++  pi+   L+ 
     fk05467   430 QP--S-RFGKLLLRLPSLRTVS-SSVIEQLFFVRLVGKT--PIE--TLI- 470  

                   vLfkEi<-*
                      +++   
     fk05467   471 ---RDM    473  

PF00104.20.ls: domain 1 of 1, from 291 to 473: score 223.6, E = 4.1e-64
                   *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk
                      +r l+++vewa+++P+F +L + DQ++LL+  w+el++L++a++s++
     fk05467   291    ARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMP 337  

                   ek.elllfpdggdif.eeqlr.ggl.elvrilqelv.plreLkldeeEya
                   +  + ll+  g +  ++++ r   + +++ri+qe v++l++L++d +Ey+
     fk05467   338 LHvAPLLAAAGLHASpMSADRvVAFmDHIRIFQEQVeKLKALHVDSAEYS 387  

                   lLkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspq
                   +LkAivLf++d++g  l++ +++e+lqek ++aL eY++++y   p+   
     fk05467   388 CLKAIVLFTSDACG--LSDAAHIESLQEKSQCALEEYVRSQY---PN--- 429  

                   dprgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLld
                   +p  + RF+kLLl+Lp+lr++s s +ie+lff++l g++  pi+   L+ 
     fk05467   430 QP--S-RFGKLLLRLPSLRTVS-SSVIEQLFFVRLVGKT--PIE--TLI- 470  

                   vLfkEi<-*
                      +++   
     fk05467   471 ---RDM    473  

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