hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12180154/chunk_1/iprscan-20090618-12180154.nocrc
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Query sequence: fk05477
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00069.15.ls Protein kinase domain                       264.3    2.2e-76   1
PF00069.15.fs Protein kinase domain                       262.5    8.2e-76   1
PF07714.7.fs Protein tyrosine kinase                      32.8      2e-09   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00069.15.fs   1/1     378   648 ..     1   287 []   262.5  8.2e-76
PF07714.7.fs   1/2     378   503 ..     1   136 [.    31.8  3.8e-09
PF00069.15.ls   1/1     378   648 ..     1   287 []   264.3  2.2e-76

Alignments of top-scoring domains:
PF00069.15.fs: domain 1 of 1, from 378 to 648: score 262.5, E = 8.2e-76
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      ++ lek+GsG fG+V+k++++ +g+i+A+K+ kk+ + s  +++a+r
     fk05477   378    FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALR 424  

                   lsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls
                     E++ ++ L++H ++vr++ ++ ++dh+ +  Eyc+gG    +L d++s
     fk05477   425 --EVYAHAVLgQHSHVVRYFSAWAEDDHMLIQNEYCNGG----SLADAIS 468  

                   etrrkgpll.fsedeakkialQilrgleYLHsngiiHRDLKPeNILldnn
                     ++++ ++ f e e+k+ +lQ+ rgl Y+Hs++ +H D+KP+NI+++++
     fk05477   469 --ENYRIMSyFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRT 516  

                   gvvda...............flKiaDFGlAkklst.sss.lttfvGTpwY
                     ++a ++++++++  +++ ++Ki+D G       ++ s++++  G +++
     fk05477   517 SIPNAaseegdeddwasnkvMFKIGDLGH-----VtRISsPQVEEGDSRF 561  

                   mAPEvllggngygtkvDvWSlGvilyelltGkpPFsgev.q.ds.ldqlq
                   +A Evl+++  + +k+D+++l +++ + +  +p+ ++ +++++ +   l 
     fk05477   562 LANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDqWhEIrQGRLP 611  

                   lirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskR
                   +i ++l+                         +e+ +L+k ++++DP++R
     fk05477   612 RIPQVLS-------------------------QEFTELLKVMIHPDPERR 636  

                   ltaeeilqHPwf<-*
                   ++a+ +++H  +   
     fk05477   637 PSAMALVKHSVL    648  

PF07714.7.fs: domain 1 of 2, from 378 to 503: score 31.8, E = 3.8e-09
                   *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei
                      ++ ++k+G+G+FG+V+k++ +     +++  A+K  +k+  a + + 
     fk05477   378    FHELEKIGSGEFGSVFKCVKR----LDGCIYAIKRSkKP-LAGSVD- 418  

                   eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd
                     +  lrE+     lG+H ++Vr+  +  + ++     ++i  Ey+ gG+
     fk05477   419 -EQNALREVYAHAVLGQHSHVVRYFSAWAE-DDH----MLIQNEYCNGGS 462  

                   LldfLrkhr.egrpLtlkdLlsfalQiAkGMeYLesknfvH<-*
                   L d   ++ +  + ++  +L +  lQ+ +G+ Y +s+ +vH   
     fk05477   463 LADAISENYrIMSYFKEAELKDLLLQVGRGLRYIHSMSLVH    503  

PF00069.15.ls: domain 1 of 1, from 378 to 648: score 264.3, E = 2.2e-76
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      ++ lek+GsG fG+V+k++++ +g+i+A+K+ kk+ + s  +++a+r
     fk05477   378    FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALR 424  

                   lsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls
                     E++ ++ L++H ++vr++ ++ ++dh+ +  Eyc+gG    +L d++s
     fk05477   425 --EVYAHAVLgQHSHVVRYFSAWAEDDHMLIQNEYCNGG----SLADAIS 468  

                   etrrkgpll.fsedeakkialQilrgleYLHsngiiHRDLKPeNILldnn
                     ++++ ++ f e e+k+ +lQ+ rgl Y+Hs++ +H D+KP+NI+++++
     fk05477   469 --ENYRIMSyFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRT 516  

                   gvvda...............flKiaDFGlAkklst.sss.lttfvGTpwY
                     ++a ++++++++  +++ ++Ki+D G       ++ s++++  G +++
     fk05477   517 SIPNAaseegdeddwasnkvMFKIGDLGH-----VtRISsPQVEEGDSRF 561  

                   mAPEvllggngygtkvDvWSlGvilyelltGkpPFsgev.q.ds.ldqlq
                   +A Evl+++  + +k+D+++l +++ + +  +p+ ++ +++++ +   l 
     fk05477   562 LANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDqWhEIrQGRLP 611  

                   lirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskR
                   +i ++l+                         +e+ +L+k ++++DP++R
     fk05477   612 RIPQVLS-------------------------QEFTELLKVMIHPDPERR 636  

                   ltaeeilqHPwf<-*
                   ++a+ +++H  +   
     fk05477   637 PSAMALVKHSVL    648  

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