hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12180154/chunk_1/iprscan-20090618-12180154.nocrc
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Query sequence: fk05477
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 125.8    4.8e-33   1
SM00219                                                 -13.0    2.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     378   648 ..     1   280 []   -13.0  2.5e-10
SM00220    1/1     378   648 ..     1   231 []   125.8  4.8e-33

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 378 to 648: score -13.0, E = 2.5e-10
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       + ++k+G+G+FG V+k++ + ++   A+K  k+   ++ +++  lr
     fk05477   378    FHELEKIGSGEFGSVFKCVKRldgCIYAIKRSKKPLagsvdEQNALR 424  

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   E      lG +H ++V+ + +  e+       + ++i  Ey+ gG+L d 
     fk05477   425 EVYAHAVLG-QHSHVVRYFSAWAED-------DHMLIQNEYCNGGSLADA 466  

                   Lrknrpk...lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgen
                   + +n +  + ++ ++L +  lQ+ +G +Y++s+ +vH D+   N+ +++ 
     fk05477   467 ISENYRImsyFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRT 516  

                   k...................vvKIsDFGLsRdlyddDkkGeskdyYrkkg
                     ++  ++++++++  +++   KI+D G    ++       s+       
     fk05477   517 SipnaaseegdeddwasnkvMFKIGDLG---HVTRI-----SSPQVEEG- 557  

                   gkggktllPirWmAPEslkdgkFts..kSDVWSFGVlLWEiftlGeqPYp
                     ++++      +A E+l+++ +t+ +k D+++   +   ++  G++P p
     fk05477   558 --DSRF------LANEVLQEN-YTHlpKADIFALALTV--VCAAGAEPLP 596  

                   geiqqfmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWae
                           n +  + +++G+ +++P+          ++e  +l +   + 
     fk05477   597 R-------NGDQWHEIRQGRLPRIPQV--------LSQEFTELLKVMIHP 631  

                   dPedRPtFsel..verl<-*
                   dPe RP+  +l +++ l   
     fk05477   632 DPERRPSAMALvkHSVL    648  

SM00220: domain 1 of 1, from 378 to 648: score 125.8, E = 4.8e-33
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      ++ l+k+G+G FG+V++++++ +g ++AiK+ k++  ++ +++++lr
     fk05477   378    FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKkplagsvdeQNALR 424  

                   EikiLkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                   E+  +   ++H ++V+++ ++ ++d++ +  Eyc+G  G+L d + ++ r
     fk05477   425 EVYAHAVlgQHSHVVRYFSAWAEdDHMLIQNEYCNG--GSLADAISENYR 472  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds.....
                       +++ E e + ++ Q+ ++L Y+Hs+  +H D+KP+Ni++++++ ++
     fk05477   473 IM--SYFKEaELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRtsipn 520  

                   ................hvKlaDFGlArql...ttfvGTpeYmAPEvl...
                     ++++++++  +++   K++D G  ++++++    G   ++A Evl+++
     fk05477   521 aaseegdeddwasnkvMFKIGDLGHVTRIsspQVEEGDSRFLANEVLqen 570  

                   .gYgkpavDiWSlGcilyElltGkpPFp..qldlifkkig........Sp
                     + + ++Di +l  ++   +  +p+ +++++   +++ + ++ +   S+
     fk05477   571 yTHLP-KADIFALALTVVCAAGAEPLPRngDQWHEIRQGRlpripqvlSQ 619  

                   eakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   e+ +L+k + + dPe+R++a  + +       H  +   
     fk05477   620 EFTELLKVMIHPDPERRPSAmALVK-------HSVL    648  

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