hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-03211932/chunk_1/iprscan-20080811-03211932.nocrc
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Query sequence: fk05484
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02263.9.fs Guanylate-binding protein, N-terminal domain    43.6    2.5e-12   1
PF02263.9.ls Guanylate-binding protein, N-terminal domain    20.2    9.1e-09   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           15.5    3.9e-05   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           17.3     0.0024   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      75   115 ..     1    50 []    15.5  3.9e-05
PF00097.15.ls   1/1      75   115 ..     1    50 []    17.3   0.0024
PF02263.9.fs   1/1     163   312 ..     1   152 [.    43.6  2.5e-12
PF02263.9.ls   1/1     163   419 ..     1   289 []    20.2  9.1e-09

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 75 to 115: score 15.5, E = 3.9e-05
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt
                      C ICle l +p       l CgH      fC  C +++   ++++ +
     fk05484    75    CSICLERLRDPI-----SLDCGHD-----FCIRCFSTHRLPgCEPPC 111  

                   CplC<-*
                   Cp C   
     fk05484   112 CPEC    115  

PF00097.15.ls: domain 1 of 1, from 75 to 115: score 17.3, E = 0.0024
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt
                      C ICle l +p       l CgH      fC  C +++   ++++ +
     fk05484    75    CSICLERLRDPI-----SLDCGHD-----FCIRCFSTHRLPgCEPPC 111  

                   CplC<-*
                   Cp C   
     fk05484   112 CPEC    115  

PF02263.9.fs: domain 1 of 1, from 163 to 312: score 43.6, E = 2.5e-12
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                       g l l   A+++ L ++ a++ pV+  a+ G  + GKSfL+N L++
     fk05484   163    SGGLILRMGAINRCLKHPLARDTPVCLLAVLGEQHSGKSFLLNHLLQ 209  

                   Ylynk.......dssdWlggnsekntGFslgsTveseTkGIwmWcvpfli
                         ++ ++++     gg+   ++G  +g    +   GIwmW+ pfl 
     fk05484   210 ----GlpglesgEGGRPRGGEA-SLQGCRWGANGLA--RGIWMWSHPFLL 252  

                   dhpnkpevtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgt
                     +++++v++ L DT  +  +e    +  +   AL ++LSS ++  +++ 
     fk05484   253 -GKEGKKVAVFLVDTGDAMSPEL-SRETRIKLCALTTMLSSYQILSTSQE 300  

                   IneqaLdqLhlV<-*
                       +Ld L  +   
     fk05484   301 LKDTDLDYLEMF    312  

PF02263.9.ls: domain 1 of 1, from 163 to 419: score 20.2, E = 9.1e-09
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                       g l l   A+++ L ++ a++ pV+  a+ G  + GKSfL+N L++
     fk05484   163    SGGLILRMGAINRCLKHPLARDTPVCLLAVLGEQHSGKSFLLNHLLQ 209  

                   Ylynk.......dssdWlggnsekntGFslgsTveseTkGIwmWcvpfli
                         ++ ++++     gg+   ++G  +g    +   GIwmW+ pfl 
     fk05484   210 ----GlpglesgEGGRPRGGEA-SLQGCRWGANGLA--RGIWMWSHPFLL 252  

                   dhpnkpevtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgt
                     +++++v++ L DT  +  +e    +  +   AL ++LSS ++  +++ 
     fk05484   253 -GKEGKKVAVFLVDTGDAMSPEL-SRETRIKLCALTTMLSSYQILSTSQE 300  

                   IneqaLdqLhlVTELTelIRakssPdegrvadssefvsfFPdfvWtvRDF
                       +Ld L  +                +v  +     + + +  +vRD 
     fk05484   301 LKDTDLDYLEMFVH------------VAEVMGKHYGMVPIQHLDLLVRDS 338  

                   sLeLeldggaitgdeyLenaLklsqgqheelqnsNelRecIrkfFpkrkC
                   s + +++ g ++      n  +  +g  +++q+       ++    + +C
     fk05484   339 SHPNKAGQGHVG------NIFQRLSGRYPKVQE------LLQG--KRARC 374  

                   FvfdrPglkkkllpqleelredeLdpeFkeqldafcsyifspeskvktl<
                    +++ Pg ++    q    +  + d++F+  l a +s ++s  ++ +   
     fk05484   375 CLLPAPGRRRMN--QGHA-SPGDTDDDFRHLLGAYVSDVLS-AAPQHAK  419  

                   -*
                     
     fk05484     -    -    

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