hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-03263821/chunk_1/iprscan-20080811-03263821.nocrc
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Query sequence: fk05513
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00622.18.fs SPRY domain                                    136.6    1.4e-38   1
PF00622.18.ls SPRY domain                                    138.4    1.8e-38   1
PF02037.17.fs SAP domain                                      48.8    1.6e-12   1
PF02037.17.ls SAP domain                                      50.9    4.1e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02037.17.fs   1/1      47    81 ..     1    35 []    48.8  1.6e-12
PF02037.17.ls   1/1      47    81 ..     1    35 []    50.9  4.1e-12
PF00622.18.fs   1/1     298   431 ..     1   154 []   136.6  1.4e-38
PF00622.18.ls   1/1     298   431 ..     1   154 []   138.4  1.8e-38

Alignments of top-scoring domains:
PF02037.17.fs: domain 1 of 1, from 47 to 81: score 48.8, E = 1.6e-12
                   *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-*
                      +  LkV+eL+eeL++rGL+t G KaeL eRL++al   
     fk05513    47    VRRLKVNELREELQRRGLDTRGLKAELAERLQAAL    81   

PF02037.17.ls: domain 1 of 1, from 47 to 81: score 50.9, E = 4.1e-12
                   *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-*
                      +  LkV+eL+eeL++rGL+t G KaeL eRL++al   
     fk05513    47    VRRLKVNELREELQRRGLDTRGLKAELAERLQAAL    81   

PF00622.18.fs: domain 1 of 1, from 298 to 431: score 136.6, E = 1.4e-38
                   *->sGkhYfEVevdtggg.........epthwrvGwatksvhlppgfdlr
                       G+  fE ++ +    ++ ++++++p ++r+Gw+ +s+         
     fk05513   298    RGRVCFEMKINEEISvkhlpstepDPHVVRIGWSLDSC--------- 335  

                   sskrkggerllGddegswgydgsggkkyhagesgepyglpfqekgdviGc
                             lG++++s+gy g+g kk  ++++ e yg++f e +dviGc
     fk05513   336 -------STQLGEEPFSYGYGGTG-KKSTNSRF-ENYGDKFAE-NDVIGC 375  

                   flDyeag..VtisFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavsl
                   f D+e+g++V++sFtkNGk++g   +++ + +++ ++    ++LyP+v +
     fk05513   376 FADFECGndVELSFTKNGKWMG---IAFRIQKEALGG----QALYPHVLV 418  

                   gsadgggeairlnfgqlp<-*
                   +     ++a+++nfgq+    
     fk05513   419 K-----NCAVEFNFGQRA    431  

PF00622.18.ls: domain 1 of 1, from 298 to 431: score 138.4, E = 1.8e-38
                   *->sGkhYfEVevdtggg.........epthwrvGwatksvhlppgfdlr
                       G+  fE ++ +    ++ ++++++p ++r+Gw+ +s+         
     fk05513   298    RGRVCFEMKINEEISvkhlpstepDPHVVRIGWSLDSC--------- 335  

                   sskrkggerllGddegswgydgsggkkyhagesgepyglpfqekgdviGc
                             lG++++s+gy g+g kk  ++++ e yg++f e +dviGc
     fk05513   336 -------STQLGEEPFSYGYGGTG-KKSTNSRF-ENYGDKFAE-NDVIGC 375  

                   flDyeag..VtisFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavsl
                   f D+e+g++V++sFtkNGk++g   +++ + +++ ++    ++LyP+v +
     fk05513   376 FADFECGndVELSFTKNGKWMG---IAFRIQKEALGG----QALYPHVLV 418  

                   gsadgggeairlnfgqlp<-*
                   +     ++a+++nfgq+    
     fk05513   419 K-----NCAVEFNFGQRA    431  

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