hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-03263821/chunk_1/iprscan-20080811-03263821.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk05513 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00449 150.8 1.5e-40 1 SM00513 51.4 1.2e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00513 1/1 47 81 .. 1 35 [] 51.4 1.2e-10 SM00449 1/1 298 431 .. 1 145 [] 150.8 1.5e-40 Alignments of top-scoring domains: SM00513: domain 1 of 1, from 47 to 81: score 51.4, E = 1.2e-10 *->lskLkVseLkdeLkkrGLstsGrKaeLvkRLleal<-* + LkV+eL++eL++rGL+t G+KaeL +RL++al fk05513 47 VRRLKVNELREELQRRGLDTRGLKAELAERLQAAL 81 SM00449: domain 1 of 1, from 298 to 431: score 150.8, E = 1.5e-40 *->sGkhYfEVevdtggd..........kghwrvGvatksvhlypfkvrr G+++fE++++++++ ++ ++++++++ +r+G++ +s fk05513 298 RGRVCFEMKINEEISvkhlpstepdPHVVRIGWSLDS---------- 334 krkggvsllGedkgSwgyrgdggkkyhasefgeeyglpfqepgDviGcfl ++ +lGe+++S+gy g+g kk+++s+f e+yg++f e DviGcf fk05513 335 ----CSTQLGEEPFSYGYGGTG-KKSTNSRF-ENYGDKFAE-NDVIGCFA 377 Dleag.gStisFykNGkyLgdshilaffdvtfsgpLyPavslgstdgGge D+e+g+++++sF+kNGk +g +++ + +++ ++++LyP+v +++ + fk05513 378 DFECGnDVELSFTKNGKWMG-IAFRIQKEALGGQALYPHVLVKN-----C 421 svrlnfGp.p<-* +v++nfG++ fk05513 422 AVEFNFGQrA 431 //