hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-15262831/chunk_1/iprscan-20090525-15262831.nocrc
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Query sequence: fk05554
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 140.1    2.3e-37   5
SM00349                                                  91.4    1.1e-22   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1     202   264 ..     1    62 []    91.4  1.1e-22
SM00355      1/5     522   544 ..     1    23 []    28.7  0.00082
SM00355      2/5     550   572 ..     1    23 []    22.6    0.056
SM00355      3/5     578   600 ..     1    23 []    28.1   0.0012
SM00355      4/5     606   628 ..     1    23 []    29.4  0.00048
SM00355      5/5     634   656 ..     1    23 []    31.4  0.00013

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 202 to 264: score 91.4, E = 1.1e-22
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGg.fqvs
                      VtF D+AV+Fs++EW+ LD +Q++LY++ ++ENY++L+SL+++ +v+
     fk05554   202    VTFVDIAVYFSEDEWKNLDEWQKELYNNLVKENYKTLMSLDAeGSVP 248  

                   kpdliskLEqgeEpwi<-*
                   kpd   + E +eEp++   
     fk05554   249 KPDAPVQAEPREEPCV    264  

SM00355: domain 1 of 5, from 522 to 544: score 28.7, E = 0.00082
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y Cp+ Cgksf  +++L+ H r+H   
     fk05554   522    YSCPE-CGKSFGVRkSLIIHHRSH    544  

SM00355: domain 2 of 5, from 550 to 572: score 22.6, E = 0.056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C ksf+ ++ L+rH+++H   
     fk05554   550    YECAE-CEKSFNCHsGLIRHQMTH    572  

SM00355: domain 3 of 5, from 578 to 600: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C k++s+k++L++H+r H   
     fk05554   578    YKCSE-CEKTYSRKeHLQNHQRLH    600  

SM00355: domain 4 of 5, from 606 to 628: score 29.4, E = 0.00048
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + Cgksf +k++L +H+r+H   
     fk05554   606    FQCAL-CGKSFIRKqNLLKHQRIH    628  

SM00355: domain 5 of 5, from 634 to 656: score 31.4, E = 0.00013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgksf+ k++Lk H+rvH   
     fk05554   634    YTCGE-CGKSFRYKeSLKDHLRVH    656  

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