hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-03390571/chunk_1/iprscan-20080811-03390571.nocrc
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Query sequence: fk05619
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02134.11.fs Repeat in ubiquitin-activating (UBA) protein   228.9    1.1e-65   3
PF02134.11.ls Repeat in ubiquitin-activating (UBA) protein   228.1    1.8e-65   2
PF00899.11.ls ThiF family                                    204.4    2.4e-58   2
PF00899.11.fs ThiF family                                    200.7    3.2e-57   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00899.11.fs   1/2     132   263 ..     1   144 []    36.6  6.5e-10
PF00899.11.ls   1/2     132   263 ..     1   144 []    38.5  1.9e-09
PF00899.11.ls   2/2     528   671 ..     1   144 []   166.0    9e-47
PF00899.11.fs   2/2     528   671 ..     1   144 []   164.1  3.3e-46
PF02134.11.fs   2/3     814   876 ..     1    75 []    76.9  1.1e-20
PF02134.11.ls   1/2     814   876 ..     1    75 []    78.7  1.6e-20
PF02134.11.ls   2/2     909   981 ..     1    75 []   149.3  9.1e-42
PF02134.11.fs   3/3     909   981 ..     1    75 []   147.4  3.6e-41

Alignments of top-scoring domains:
PF00899.11.fs: domain 1 of 2, from 132 to 263: score 36.6, E = 6.5e-10
                   *->rssrVlvvGaGGlGspaaeyLAraGvGkltlvDfDtVElSNLnRQiL
                        s+Vlv G+ GlG ++a++    Gv+  tl D  t  + +L  Q+ 
     fk05619   132    QTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFY 178  

                   fteaDiGkpKaevAkerlreiNPdveveayperlteenaeellFkqkkdv
                    +e+DiGk+ aev + rl e+N++v v+ay+  l    +e++l +   ++
     fk05619   179 LREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPL----VEDFL-S---GF 220  

                   pDlviDatDnfeaRyllndavacvklgiPlIsagvlagfeGqvptvi<-*
                     +v+     +e  + + +  +c+++gi+l+ a +  g  Gq+++ +   
     fk05619   221 -QVVVLTNTPLEDQLRVGE--FCHNRGIKLVVADTR-GLFGQLFCDF    263  

PF00899.11.ls: domain 1 of 2, from 132 to 263: score 38.5, E = 1.9e-09
                   *->rssrVlvvGaGGlGspaaeyLAraGvGkltlvDfDtVElSNLnRQiL
                        s+Vlv G+ GlG ++a++    Gv+  tl D  t  + +L  Q+ 
     fk05619   132    QTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFY 178  

                   fteaDiGkpKaevAkerlreiNPdveveayperlteenaeellFkqkkdv
                    +e+DiGk+ aev + rl e+N++v v+ay+  l    +e++l +   ++
     fk05619   179 LREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPL----VEDFL-S---GF 220  

                   pDlviDatDnfeaRyllndavacvklgiPlIsagvlagfeGqvptvi<-*
                     +v+     +e  + + +  +c+++gi+l+ a +  g  Gq+++ +   
     fk05619   221 -QVVVLTNTPLEDQLRVGE--FCHNRGIKLVVADTR-GLFGQLFCDF    263  

PF00899.11.ls: domain 2 of 2, from 528 to 671: score 166.0, E = 9e-47
                   *->rssrVlvvGaGGlGspaaeyLAraGv.....GkltlvDfDtVElSNL
                       + +  +vGaG++G++++++ A+ G + +++G +++ D+Dt+E+SNL
     fk05619   528    GKQKYFLVGAGAIGCELLKNFAMIGLgcgegGEIIVTDMDTIEKSNL 574  

                   nRQiLfteaDiGkpKaevAkerlreiNPdveveayperl...teenaeel
                   nRQ+Lf++ D+ k K ++A++++r++NP+++v+ ++ r++++te  +++ 
     fk05619   575 NRQFLFRPWDVTKLKSDTAAAAVRQMNPHIRVTSHQNRVgpdTERIYDDD 624  

                   lFkqkkdvpDlviDatDnfeaRyllndavacvklgiPlIsagvlagfeGq
                   +F+   +  D v +a+Dn +aR++ ++  +cv +++Pl+++g+l g++G+
     fk05619   625 FFQ---NL-DGVANALDNVDARMYMDR--RCVYYRKPLLESGTL-GTKGN 667  

                   vptvi<-*
                   v +v+   
     fk05619   668 V-QVV    671  

PF00899.11.fs: domain 2 of 2, from 528 to 671: score 164.1, E = 3.3e-46
                   *->rssrVlvvGaGGlGspaaeyLAraGv.....GkltlvDfDtVElSNL
                       + +  +vGaG++G++++++ A+ G + +++G +++ D+Dt+E+SNL
     fk05619   528    GKQKYFLVGAGAIGCELLKNFAMIGLgcgegGEIIVTDMDTIEKSNL 574  

                   nRQiLfteaDiGkpKaevAkerlreiNPdveveayperl...teenaeel
                   nRQ+Lf++ D+ k K ++A++++r++NP+++v+ ++ r++++te  +++ 
     fk05619   575 NRQFLFRPWDVTKLKSDTAAAAVRQMNPHIRVTSHQNRVgpdTERIYDDD 624  

                   lFkqkkdvpDlviDatDnfeaRyllndavacvklgiPlIsagvlagfeGq
                   +F+   +  D v +a+Dn +aR++ ++  +cv +++Pl+++g+l g++G+
     fk05619   625 FFQ---NL-DGVANALDNVDARMYMDR--RCVYYRKPLLESGTL-GTKGN 667  

                   vptvi<-*
                   v +v+   
     fk05619   668 V-QVV    671  

PF02134.11.fs: domain 2 of 3, from 814 to 876: score 76.9, E = 1.1e-20
                   *->eFDkDDdsplHmdFvtaaAnlRAenygIpgpvdrfkikgiagnIkIP
                      +FD+++  plH+d+v+aaAnl+A++yg +g++dr++++ +++++++P
     fk05619   814    TFDVNN--PLHLDYVMAAANLFAQTYGLTGSQDRAAVATFLQSVQVP 858  

                   AiAtTNAvvAGlcclEavKvltgdadel<-*
                   +++++    +G      vK++ +d++++   
     fk05619   859 EFTPK----SG------VKIHVSDQELQ    876  

PF02134.11.ls: domain 1 of 2, from 814 to 876: score 78.7, E = 1.6e-20
                   *->eFDkDDdsplHmdFvtaaAnlRAenygIpgpvdrfkikgiagnIkIP
                      +FD+++  plH+d+v+aaAnl+A++yg +g++dr++++ +++++++P
     fk05619   814    TFDVNN--PLHLDYVMAAANLFAQTYGLTGSQDRAAVATFLQSVQVP 858  

                   AiAtTNAvvAGlcclEavKvltgdadel<-*
                   +++++    +G      vK++ +d++++   
     fk05619   859 EFTPK----SG------VKIHVSDQELQ    876  

PF02134.11.ls: domain 2 of 2, from 909 to 981: score 149.3, E = 9.1e-42
                   *->eFDkDDdsplHmdFvtaaAnlRAenygIpgpvdrfkikgiagnIkIP
                       F+kDDds++HmdF++aa+nlRAeny+Ip ++dr+k k iag+I IP
     fk05619   909    DFEKDDDSNFHMDFIVAASNLRAENYDIP-SADRHKSKLIAGKI-IP 953  

                   AiAtTNAvvAGlcclEavKvltgdadel<-*
                   AiAtT+A+v Gl+clE++Kv++g++ +    
     fk05619   954 AIATTTAAVVGLVCLELYKVVQGHRQLD    981  

PF02134.11.fs: domain 3 of 3, from 909 to 981: score 147.4, E = 3.6e-41
                   *->eFDkDDdsplHmdFvtaaAnlRAenygIpgpvdrfkikgiagnIkIP
                       F+kDDds++HmdF++aa+nlRAeny+Ip ++dr+k k iag+I IP
     fk05619   909    DFEKDDDSNFHMDFIVAASNLRAENYDIP-SADRHKSKLIAGKI-IP 953  

                   AiAtTNAvvAGlcclEavKvltgdadel<-*
                   AiAtT+A+v Gl+clE++Kv++g++ +    
     fk05619   954 AIATTTAAVVGLVCLELYKVVQGHRQLD    981  

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