hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-03390571/chunk_1/iprscan-20080811-03390571.nocrc
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Query sequence: fk05619
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR01408 Ube1: ubiquitin-activating enzyme E1          1772.6          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR01408   1/1     110  1119 .]     1  1033 []  1772.6        0

Alignments of top-scoring domains:
TIGR01408: domain 1 of 1, from 110 to 1119: score 1772.6, E = 0
                   *->eIDedLYSRQlyVlGdeAMkkmakSnVLisGmkGLGvEIAKNlvLAG
                       IDe+LYSRQlyVlG+eAMk++  S VL+sG +GLGvEIAKN++L G
     fk05619   110    DIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGG 156  

                   VKsVTLhDeekvrlwDLSsnFfLsEDDVgNKknRAeavvkkLaeLNqyVv
                   VK+VTLhD    +  DLSs+F L E D+g  knRAe++  +LaeLN yV+
     fk05619   157 VKAVTLHDQGTAQWADLSSQFYLREEDIG--KNRAEVSQPRLAELNSYVP 204  

                   VssvskslNketDLSfLdkFqcVVlteisLekqleinDFchsqqPPIaFi
                   V+  + +l +     fL++Fq+VVlt + Le ql +  Fch     I+ +
     fk05619   205 VTAYTGPLVED----FLSGFQVVVLTNTPLEDQLRVGEFCHNRG--IKLV 248  

                   kADvrGLFgsvFCDFGdeFavlDtdGeEPktgiIAsItdeNqGvVtcled
                    AD rGLFg +FCDFG+e + +D  Ge P+  +++ +t +N+GvVtcl++
     fk05619   249 VADTRGLFGQLFCDFGEEMILTDSNGEQPLSAMVSMVTKDNPGVVTCLDE 298  

                   erheLEdGdfvkFsEVeGMtgLNDGkprkikvksPYsFsigdvtenlgsy
                    rh++E Gdfv FsEV+GM +LN+  p  ikv +PY+Fsi d+   +  y
     fk05619   299 ARHGFESGDFVSFSEVQGMVELNGNQPMEIKVLGPYTFSICDTSN-FSDY 347  

                   vkgGivtQVKvPkkvsFkSLreaLKdPGeylysDFSkferPpelHlAfqA
                   + gGiv QVKvPkk+sFkSL  +L  P +++  DF kf rP +lH+ fqA
     fk05619   348 IRGGIVSQVKVPKKISFKSLVASLAEP-DFVVTDFAKFSRPAQLHIGFQA 396  

                   LdaFkekyeGrlPragseeDAeeLlklAtkIaetqleekve..dvdekLv
                   L +F ++++ r Pr+++eeDA+eL  lA +++    +  v ++++de+L+
     fk05619   397 LHQFCAQHG-RPPRPRNEEDAAELVALAQAVNA-RALPAVQqnNLDEDLI 444  

                   kelSytAkGvLspmAAalGGvvaQEVlKAvtgKFyPLkQyfYfdsveslp
                   + l y A G+L p+ A++GG +aQEV+KA++gKF P  Q++Yfd++e lp
     fk05619   445 RKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDALECLP 494  

                   SevtikveseefkPRgsRYDAqiAvfGdkfqkKLedlkvFlVGaGAiGCE
                       +   ++ ++ R  RYD+q AvfG+ +q+KL   k FlVGaGAiGCE
     fk05619   495 EDKEVL-TEDKCLQRQNRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCE 543  

                   mLKNlALmGVatgkEkGkitVTDdDlIEKSNLnRQFLFRprdigkaKSev
                   +LKN+A++G ++g+  G i VTD+D IEKSNLnRQFLFRp+d+ k+KS +
     fk05619   544 LLKNFAMIGLGCGE-GGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLKSDT 592  

                   AAdAvaviNprlkGKIeAyqnrVGpetEtiFdDeFyekldvVvnALDNVe
                   AA Av  +Np +   ++++qnrVGp tE i+dD F+ +ld V nALDNV+
     fk05619   593 AAAAVRQMNPHIR--VTSHQNRVGPDTERIYDDDFFQNLDGVANALDNVD 640  

                   ARlYVDsRClyfekPLLeSGTLGTKGnTqvVVPHLTEsYgSsrDPPEkei
                   AR+Y D+RC+y+ kPLLeSGTLGTKGn qvV+P LTEsY Ss+DPPEk+i
     fk05619   641 ARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSI 690  

                   PiCTlksFPaaIeHtiaWARdkFEglfekkpsevNkYLsspseyeevllk
                   PiCTlk+FP+aIeHt++WARd+FEglf+++  +vN YL  p  + e  l 
     fk05619   691 PICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPK-FVERTLR 739  

                   iqsaqarevlerivelLekekPrsFeeCvewARLkFekYFnnkvkQLLyt
                       q++evle +   L+  +P+++ +Cv+wA       + n+++QLL++
     fk05619   740 LAGTQPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHN 789  

                   FPkDaatstGspFWsaPKRaPsPLkFdlsepehLdFivaAAkLyAevYGi
                   FP D  ts G+pFWs+PKR P PL Fd+++p+hLd++ aAA L A +YG+
     fk05619   790 FPPDQLTSSGAPFWSGPKRCPHPLTFDVNNPLHLDYVMAAANLFAQTYGL 839  

                   piaEedksPKAeallevlsevkvpeFkPksdkkiqtdEkaekpetaaiSS
                        d    A+++   l  v vpeF Pks+ ki +  ++     a++  
     fk05619   840 TG-SQDR---AAVA-TFLQSVQVPEFTPKSGVKIHVSDQELQSANASV-- 882  

                   vddkaaikdLakaidsnealvSPDfrmkpleFEKDDDsNyHiDfItAaSN
                     d   +++L + ++s+  l +  f+m p++FEKDDDsN+H+DfI AaSN
     fk05619   883 --DDSRLEELKATLPSPDKLPG--FKMYPIDFEKDDDSNFHMDFIVAASN 928  

                   LRAknYsIepaDrfKtKfiAGkIiPAiATsTAvvsGLVcLELvKvvDGkk
                   LRA nY+I+ aDr K K iAGkIiPAiAT+TA v GLVcLEL+Kvv G  
     fk05619   929 LRAENYDIPSADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHR 978  

                   kvEvYkNtFlNLAiPLfvfaepleskkvKvrdkaidkiWDRwvlkGK...
                       YkN+FlNLA+P f f+epl+ +     + +++  WDR+ ++G +++
     fk05619   979 QLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWT-LWDRFEVQGLqpn 1027 

                   .EdfTLrelidylkkekGLeatmvssGvkLLYasvfpPKkhaeRLdlkvs
                   +E+ TL+ ++dy+k e  Le tm+s+Gv++LY  ++p  k++eRLd  + 
     fk05619  1028 gEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMT 1077 

                   eLvkdvtkkklePyRkhLvvevACddedDeDvevPlVsiyFr<-*
                   e v  v k kl      Lv+e +C de +eDvevP V++  r   
     fk05619  1078 EIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYVRYTIR    1119 

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