hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-03445774/chunk_1/iprscan-20080811-03445774.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk05937 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00041.11.ls Fibronectin type III domain 651.9 4.9e-193 8 PF00041.11.fs Fibronectin type III domain 636.2 2.6e-188 8 PF00039.9.ls Fibronectin type I domain 217.5 2.7e-62 3 PF00039.9.fs Fibronectin type I domain 211.8 3.5e-61 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00041.11.ls 1/8 13 93 .. 1 84 [] 85.8 1.2e-22 PF00041.11.fs 1/8 13 93 .. 1 84 [] 83.9 1.9e-23 PF00041.11.ls 2/8 104 183 .. 1 84 [] 87.4 4e-23 PF00041.11.fs 2/8 104 183 .. 1 84 [] 85.5 6.7e-24 PF00041.11.ls 3/8 194 276 .. 1 84 [] 104.0 4e-28 PF00041.11.fs 3/8 194 276 .. 1 84 [] 102.0 1.2e-28 PF00041.11.fs 4/8 288 367 .. 1 84 [] 82.8 3.9e-23 PF00041.11.ls 4/8 288 367 .. 1 84 [] 84.7 2.6e-22 PF00041.11.ls 5/8 378 457 .. 1 84 [] 80.4 5.1e-21 PF00041.11.fs 5/8 378 457 .. 1 84 [] 78.5 6.9e-22 PF00041.11.fs 6/8 470 548 .. 1 84 [] 83.3 2.7e-23 PF00041.11.ls 6/8 470 548 .. 1 84 [] 85.3 1.7e-22 PF00041.11.fs 7/8 559 638 .. 1 84 [] 90.1 3.1e-25 PF00041.11.ls 7/8 559 638 .. 1 84 [] 92.1 1.6e-24 PF00041.11.fs 8/8 729 806 .. 1 84 [] 30.1 5.1e-08 PF00041.11.ls 8/8 729 806 .. 1 84 [] 32.1 1.9e-06 PF00039.9.fs 1/3 831 870 .. 1 41 [] 77.5 7.4e-22 PF00039.9.ls 1/3 831 870 .. 1 41 [] 79.5 9.9e-21 PF00039.9.ls 2/3 876 913 .. 1 41 [] 74.2 3.8e-19 PF00039.9.fs 2/3 876 913 .. 1 41 [] 72.3 2.5e-20 PF00039.9.fs 3/3 920 955 .. 1 41 [] 62.0 2.5e-17 PF00039.9.ls 3/3 920 955 .. 1 41 [] 63.9 4.9e-16 Alignments of top-scoring domains: PF00041.11.ls: domain 1 of 8, from 13 to 93: score 85.8, E = 1.2e-22 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w ++Pt+l++t++++++++++W pP+ + ++t++ v+y +p+ ++e++ fk05937 13 VPPPTDLRFTNIGPDTMRVTWAPPP-SIDLTNFLVRY-SPVKNEEdV 57 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* el+++++ + ++lt+L PgteY+v+V +v ++ +eS fk05937 58 AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQ--HES 93 PF00041.11.fs: domain 1 of 8, from 13 to 93: score 83.9, E = 1.9e-23 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w ++Pt+l++t++++++++++W pP+ + ++t++ v+y +p+ ++e++ fk05937 13 VPPPTDLRFTNIGPDTMRVTWAPPP-SIDLTNFLVRY-SPVKNEEdV 57 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* el+++++ + ++lt+L PgteY+v+V +v ++ +eS fk05937 58 AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQ--HES 93 PF00041.11.ls: domain 2 of 8, from 104 to 183: score 87.4, E = 4e-23 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk +++Pt++ ++d+t++s+t++W +P +++itgY+++ + + +g ++ fk05937 104 LDSPTGIDFSDITANSFTVHWIAP--RATITGYRIRHHPEHFSGRPR 148 eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* e +vp + +s tlt+L+PgteY+v+++A+ng +eS fk05937 149 EDRVPHSRNSITLTNLTPGTEYVVSIVALNGR--EES 183 PF00041.11.fs: domain 2 of 8, from 104 to 183: score 85.5, E = 6.7e-24 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk +++Pt++ ++d+t++s+t++W +P +++itgY+++ + + +g ++ fk05937 104 LDSPTGIDFSDITANSFTVHWIAP--RATITGYRIRHHPEHFSGRPR 148 eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* e +vp + +s tlt+L+PgteY+v+++A+ng +eS fk05937 149 EDRVPHSRNSITLTNLTPGTEYVVSIVALNGR--EES 183 PF00041.11.ls: domain 3 of 8, from 194 to 276: score 104.0, E = 4e-28 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w + P++l v + t+tsl +sW++P ++ +Y++ty +++g++++ fk05937 194 SDVPRDLEVVAATPTSLLISWDAP--AVTVRYYRITY-GETGGNSpV 237 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +e+tvpg+++++t++gLkPg++Yt++V+Av+g G++p S fk05937 238 QEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGdSPAS 276 PF00041.11.fs: domain 3 of 8, from 194 to 276: score 102.0, E = 1.2e-28 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w + P++l v + t+tsl +sW++P ++ +Y++ty +++g++++ fk05937 194 SDVPRDLEVVAATPTSLLISWDAP--AVTVRYYRITY-GETGGNSpV 237 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +e+tvpg+++++t++gLkPg++Yt++V+Av+g G++p S fk05937 238 QEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGdSPAS 276 PF00041.11.fs: domain 4 of 8, from 288 to 367: score 82.8, E = 3.9e-23 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w ++P++++vtdv+++s+++ W p+ ++p+tgY+vt pkng++++ fk05937 288 IDKPSQMQVTDVQDNSISVKWLPS--SSPVTGYRVTT-TPKNGPGpT 331 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* k++t +++t++t++gL+P +eY+v+V+A+n +eS fk05937 332 KTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPS--GES 367 PF00041.11.ls: domain 4 of 8, from 288 to 367: score 84.7, E = 2.6e-22 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w ++P++++vtdv+++s+++ W p+ ++p+tgY+vt pkng++++ fk05937 288 IDKPSQMQVTDVQDNSISVKWLPS--SSPVTGYRVTT-TPKNGPGpT 331 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* k++t +++t++t++gL+P +eY+v+V+A+n +eS fk05937 332 KTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPS--GES 367 PF00041.11.ls: domain 5 of 8, from 378 to 457: score 80.4, E = 5.1e-21 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w +aPt+l++t vt+tsl+ +W+pP n +tgY+v++ pk + ++ fk05937 378 IPAPTDLKFTQVTPTSLSAQWTPP--NVQLTGYRVRV-TPKEKTGpM 421 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ke+++ ++++s++++gL t+Y+v+V+A+++ S fk05937 422 KEINLAPDSSSVVVSGLMVATKYEVSVYALKDT--LTS 457 PF00041.11.fs: domain 5 of 8, from 378 to 457: score 78.5, E = 6.9e-22 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.w +aPt+l++t vt+tsl+ +W+pP n +tgY+v++ pk + ++ fk05937 378 IPAPTDLKFTQVTPTSLSAQWTPP--NVQLTGYRVRV-TPKEKTGpM 421 keltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ke+++ ++++s++++gL t+Y+v+V+A+++ S fk05937 422 KEINLAPDSSSVVVSGLMVATKYEVSVYALKDT--LTS 457 PF00041.11.fs: domain 6 of 8, from 470 to 548: score 83.3, E = 2.7e-23 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk s+P++ +vtd t+t++t+sW +itg++v+ p+ng+ + fk05937 470 VSPPRRARVTDATETTITISWRTK--TETITGFQVDA-VPANGQTPI 513 eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ++t++++ +syt+tgL+Pgt+Y+++++++n++ ++S fk05937 514 QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN--ARS 548 PF00041.11.ls: domain 6 of 8, from 470 to 548: score 85.3, E = 1.7e-22 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk s+P++ +vtd t+t++t+sW +itg++v+ p+ng+ + fk05937 470 VSPPRRARVTDATETTITISWRTK--TETITGFQVDA-VPANGQTPI 513 eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ++t++++ +syt+tgL+Pgt+Y+++++++n++ ++S fk05937 514 QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN--ARS 548 PF00041.11.fs: domain 7 of 8, from 559 to 638: score 90.1, E = 3.1e-25 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. +aP+nl++ ++t++sl +sW+pP ++ itgY ++y ++ +++ ++ fk05937 559 IDAPSNLRFLATTPNSLLVSWQPP--RARITGYIIKY-EKPGSPPre 602 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ++ + pg+t ++t+tgL+PgteYt++V++++++ + S fk05937 603 VVPRPRPGVT-EATITGLEPGTEYTIYVITLKNN--QKS 638 PF00041.11.ls: domain 7 of 8, from 559 to 638: score 92.1, E = 1.6e-24 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. +aP+nl++ ++t++sl +sW+pP ++ itgY ++y ++ +++ ++ fk05937 559 IDAPSNLRFLATTPNSLLVSWQPP--RARITGYIIKY-EKPGSPPre 602 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ++ + pg+t ++t+tgL+PgteYt++V++++++ + S fk05937 603 VVPRPRPGVT-EATITGLEPGTEYTIYVITLKNN--QKS 638 PF00041.11.fs: domain 8 of 8, from 729 to 806: score 30.1, E = 5.1e-08 *->P.saPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge. P++ P n+ ++++ t+sW p + + Y + ++ p+++ e+ fk05937 729 PrPYPPNVGQEALSQ--TTISWAPF---QDTSEYIISCH-PVGTDEe 769 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* + +++vpgt+ts+tltgL+ g +Y++ V A++++ ++ fk05937 770 PLQFRVPGTSTSATLTGLTRGATYNIIVEALKDQ--QRH 806 PF00041.11.ls: domain 8 of 8, from 729 to 806: score 32.1, E = 1.9e-06 *->P.saPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge. P++ P n+ ++++ t+sW p + + Y + ++ p+++ e+ fk05937 729 PrPYPPNVGQEALSQ--TTISWAPF---QDTSEYIISCH-PVGTDEe 769 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* + +++vpgt+ts+tltgL+ g +Y++ V A++++ ++ fk05937 770 PLQFRVPGTSTSATLTGLTRGATYNIIVEALKDQ--QRH 806 PF00039.9.fs: domain 1 of 3, from 831 to 870: score 77.5, E = 7.4e-22 *->CfDedTgttYqiGdtWeRpyqrGhmlqyCtClGnGrGewkC<-* CfD++T+++Y++Gd+WeR++++G++l+ C+ClG+G+G+++C fk05937 831 CFDPYTVSHYAVGDEWERMSESGFKLL-CQCLGFGSGHFRC 870 PF00039.9.ls: domain 1 of 3, from 831 to 870: score 79.5, E = 9.9e-21 *->CfDedTgttYqiGdtWeRpyqrGhmlqyCtClGnGrGewkC<-* CfD++T+++Y++Gd+WeR++++G++l+ C+ClG+G+G+++C fk05937 831 CFDPYTVSHYAVGDEWERMSESGFKLL-CQCLGFGSGHFRC 870 PF00039.9.ls: domain 2 of 3, from 876 to 913: score 74.2, E = 3.8e-19 *->CfDedTgttYqiGdtWeRpyqrGhmlqyCtClGnGrGewkC<-* C+D + g++Y+iG++W+R+ ++G+m++ CtClGnG+Ge+kC fk05937 876 CHD-N-GVNYKIGEKWDRQGENGQMMS-CTCLGNGKGEFKC 913 PF00039.9.fs: domain 2 of 3, from 876 to 913: score 72.3, E = 2.5e-20 *->CfDedTgttYqiGdtWeRpyqrGhmlqyCtClGnGrGewkC<-* C+D + g++Y+iG++W+R+ ++G+m++ CtClGnG+Ge+kC fk05937 876 CHD-N-GVNYKIGEKWDRQGENGQMMS-CTCLGNGKGEFKC 913 PF00039.9.fs: domain 3 of 3, from 920 to 955: score 62.0, E = 2.5e-17 *->CfDedTgttYqiGdtWeRpyqrGhmlqyCtClGnGrGewkC<-* C+D d g+tY++G++W+++y+ G++++ CtC+G++rG w+C fk05937 920 CYD-D-GKTYHVGEQWQKEYL-GAICS-CTCFGGQRG-WRC 955 PF00039.9.ls: domain 3 of 3, from 920 to 955: score 63.9, E = 4.9e-16 *->CfDedTgttYqiGdtWeRpyqrGhmlqyCtClGnGrGewkC<-* C+D d g+tY++G++W+++y+ G++++ CtC+G++rG w+C fk05937 920 CYD-D-GKTYHVGEQWQKEYL-GAICS-CTCFGGQRG-WRC 955 //