hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080811/iprscan-20080811-03445774/chunk_1/iprscan-20080811-03445774.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fk05937 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00060 403.3 1.3e-116 8 SM00058 237.8 9e-67 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00060 1/8 13 93 .. 1 69 [] 59.4 4.6e-13 SM00060 2/8 104 183 .. 1 69 [] 61.5 1.1e-13 SM00060 3/8 194 273 .. 1 69 [] 61.8 8.9e-14 SM00060 4/8 288 367 .. 1 69 [] 53.9 2.1e-11 SM00060 5/8 378 457 .. 1 69 [] 43.6 2.7e-08 SM00060 6/8 470 549 .. 1 69 [] 48.0 1.3e-09 SM00060 7/8 559 640 .. 1 69 [] 58.7 7.4e-13 SM00060 8/8 730 806 .. 1 69 [] 16.6 2.6 SM00058 1/3 831 875 .. 1 46 [] 81.8 8.5e-20 SM00058 2/3 876 918 .. 1 46 [] 86.4 3.5e-21 SM00058 3/3 920 960 .. 1 46 [] 69.7 3.7e-16 Alignments of top-scoring domains: SM00060: domain 1 of 8, from 13 to 93: score 59.4, E = 4.6e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. +pP++ lr+t+++++ +++++W pP++ + + v+Y++ fk05937 13 VPPPTD---LRFTNIGPD------TMRVTWAPPpsidltnfLVRYSp 50 ..................ytltgLkPgaepwteYefrVrAvngndaGeg< +++++++ + + +++++ ++lt+L Pg teY+++V+ v++ + e+ fk05937 51 vkneedvaelsispsdnaVVLTNLLPG----TEYVVSVSSVYE--QHES 93 -* fk05937 - - SM00060: domain 2 of 8, from 104 to 183: score 61.5, E = 1.1e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr...... ++P++ + ++d+t++ s+t++W +P i+gYr + ++ fk05937 104 LDSPTG---IDFSDITAN------SFTVHWIAPratITGYRirhhpe 141 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++++++ ++++ tlt+L+Pg teY+++++A ng + e+ fk05937 142 hfsgrpredrvphsrnsITLTNLTPG----TEYVVSIVALNG--REES 183 * fk05937 - - SM00060: domain 3 of 8, from 194 to 273: score 61.8, E = 8.9e-14 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr...... + P++ l+v++ t+t s+ +sW++P + +Yr + +++ fk05937 194 SDVPRD---LEVVAATPT------SLLISWDAPavtVRYYRityget 231 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++++ +++++++++t++gLkPg Y+++V+Av+g +G + fk05937 232 ggnspvqeftvpgskstATISGLKPG----VDYTITVYAVTG--RGDS 273 * fk05937 - - SM00060: domain 4 of 8, from 288 to 367: score 53.9, E = 2.1e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr...... + Ps +vtdv ++ s++++W p +++++gYr++++++ fk05937 288 IDKPSQ---MQVTDVQDN------SISVKWLPSsspVTGYRvtttpk 325 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++++++ ++++++ t++gL+P eY+++V+A n Ge+ fk05937 326 ngpgptktktagpdqteMTIEGLQPT----VEYVVSVYAQNP--SGES 367 * fk05937 - - SM00060: domain 5 of 8, from 378 to 457: score 43.6, E = 2.7e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr...... ++P++ l++t vt+t s++ +W+pP+ +gYr++++++ fk05937 378 IPAPTD---LKFTQVTPT------SLSAQWTPPnvqLTGYRvrvtpk 415 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- +++++ ++ + +++++++++gL t+Ye++V+A + + fk05937 416 ektgpmkeinlapdsssVVVSGLMVA----TKYEVSVYALKD--TLTS 457 * fk05937 - - SM00060: domain 6 of 8, from 470 to 549: score 48.0, E = 1.3e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr...... +pP++ rvtd t+t ++t+sW + i+g++++ ++ fk05937 470 VSPPRR---ARVTDATET------TITISWRTKtetITGFQvdavpa 507 ................ytltgLkPgaepwteYefrVrAvngndaGeg<-* +++++ +++ ++++++yt+tgL+Pg t Y++ ++ n+ a ++ fk05937 508 ngqtpiqrtikpdvrsYTITGLQPG----TDYKIYLYTLND-NARSS 549 SM00060: domain 7 of 8, from 559 to 640: score 58.7, E = 7.4e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...ivgYr...... ++Psn lr+ ++t++ s+ +sW+pP i+gY+ + +++ fk05937 559 IDAPSN---LRFLATTPN------SLLVSWQPPrarITGYIikyekp 596 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++++++++++++++t+tgL+Pg teY++ V+ n++ e fk05937 597 gspprevvprprpgvteATITGLEPG----TEYTIYVITLKNNQKSEP 640 * fk05937 - - SM00060: domain 8 of 8, from 730 to 806: score 16.6, E = 2.6 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... + P+n + ++ + t t+sW p + +++i+++++++ fk05937 730 RPYPPN---VGQEALSQT--------TISWAPFqdtseyIISCHpvg 765 ................ytltgLkPgaepwteYefrVrAvngndaGeg<-* +++++ + +++++++++tltgL+ g +Y++ V A + + + fk05937 766 tdeeplqfrvpgtstsATLTGLTRG----ATYNIIVEALKD--QQRH 806 SM00058: domain 1 of 3, from 831 to 875: score 81.8, E = 8.5e-20 *->CfDeqtgttYrvGdtWeRphegsghvlqCtClGggrGewkCdpvav< CfD++t +Y vGd+WeR++e+ g+ l C+ClG g+G+++Cd++++ fk05937 831 CFDPYTVSHYAVGDEWERMSES-GFKLLCQCLGFGSGHFRCDSSRW 875 -* fk05937 - - SM00058: domain 2 of 3, from 876 to 918: score 86.4, E = 3.5e-21 *->CfDeqtgttYrvGdtWeRphegsghvlqCtClGggrGewkCdpvav< C+D+ g++Y++G++W+R++e+ g++++CtClG+g+Ge+kCdp++ fk05937 876 CHDN--GVNYKIGEKWDRQGEN-GQMMSCTCLGNGKGEFKCDPHEA 918 -* fk05937 - - SM00058: domain 3 of 3, from 920 to 960: score 69.7, E = 3.7e-16 *->CfDeqtgttYrvGdtWeRphegsghvlqCtClGggrGewkCdpvav< C+D+ g+tY+vG++W+++++g +++CtC+Gg+rG w+Cd++++ fk05937 920 CYDD--GKTYHVGEQWQKEYLG--AICSCTCFGGQRG-WRCDNCRR 960 -* fk05937 - 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