hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-03510033/chunk_1/iprscan-20080811-03510033.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fk06253
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 380.1   1.4e-109   1
SM00219                                                   4.7      2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      44   302 ..     1   280 []     4.7    2e-11
SM00220    1/1      44   302 ..     1   231 []   380.1 1.4e-109

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 44 to 302: score 4.7, E = 2e-11
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       +l ++LG GaF +V++++ +++++e A K ++  + + ++++ + r
     fk06253    44    YQLFEELGKGAFSVVRRCMKIptgQEYAAKIINTKKlsardHQKLER 90   

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   Ea+i + l  kHpNiV+L+  ++ee       + +++v+ ++ gG L + 
     fk06253    91 EARICRLL--KHPNIVRLHDSISEE-------GFHYLVFDLVTGGELFED 131  

                   LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk..
                   + +++   s +d  +   QI +  ++ + +++vHRDL   N L++++ ++
     fk06253   132 IVAREY-YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSkg 180  

                   .vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk
                     vK +DFGL+ ++  d      +     +   g+ +      ++PE+l+
     fk06253   181 aAVKLADFGLAIEVQGD-----QQAWFGFA---GTPG-----YLSPEVLR 217  

                   dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR
                   +  +    D W+ GV L+ i+  G +P ++      +  ++++++k+G +
     fk06253   218 KDPYGKPVDMWACGVILY-ILLVGYPPFWD-----EDQHRLYQQIKAGAY 261  

                   lpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                     + ++       t ++e  dl+ +    +P++R t se  ++  +   
     fk06253   262 DFPSPE-----WDTVTPEAKDLINKMLTINPAKRITASEAlkHPWI    302  

SM00220: domain 1 of 1, from 44 to 302: score 380.1, E = 1.4e-109
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y+l ++lGkGaF++V+++ ++ tg+++A K+i++++ + +++++++r
     fk06253    44    YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINtkklsardhQKLER 90   

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   E +i++  +HPNIV+L+d++ ++++ ylV++++ G  G+Lf+ ++ r + 
     fk06253    91 EARICRLlKHPNIVRLHDSISEeGFHYLVFDLVTG--GELFEDIVAREY- 137  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds.....h
                        +sE +a + ++Qil+ ++++H +gI+HRDLKPeN+LL s++++  
     fk06253   138 -----YSEaDASHCIQQILESVNHCHLNGIVHRDLKPENLLLASkskgaA 182  

                   vKlaDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlG
                   vKlaDFGlA +++++++    f GTp Y++PEvl++++Ygk +vD+W++G
     fk06253   183 VKLADFGLAIEVqgdqqawFGFAGTPGYLSPEVLrkdPYGK-PVDMWACG 231  

                   cilyElltGkpPFp..qldlifkkig..............SpeakdLikk
                   +ily+ll+G+pPF+++++++++++i+ + ++ +++++++ +peakdLi+k
     fk06253   232 VILYILLVGYPPFWdeDQHRLYQQIKagaydfpspewdtvTPEAKDLINK 281  

                   lLvkdPekRlta.eaLedeldikaHPff<-*
                   +L+ +P+kR+ta+eaL+       HP++   
     fk06253   282 MLTINPAKRITAsEALK-------HPWI    302  

//