hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12252451/chunk_1/iprscan-20090618-12252451.nocrc
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Query sequence: fk06330
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          93.4    6.3e-25   3
PF00096.16.fs Zinc finger, C2H2 type                          87.4    3.9e-23   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/3     241   265 ..     1    24 []    27.8  1.1e-05
PF00096.16.ls   1/3     241   265 ..     1    24 []    29.8  8.8e-06
PF00096.16.fs   2/3     271   295 ..     1    24 []    31.8  1.1e-06
PF00096.16.ls   2/3     271   295 ..     1    24 []    33.8  5.5e-07
PF00096.16.fs   3/3     301   323 ..     1    24 []    27.8  1.1e-05
PF00096.16.ls   3/3     301   323 ..     1    24 []    29.8  8.9e-06

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 3, from 241 to 265: score 27.8, E = 1.1e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C+f++C k+++ +s+Lk+H+rtH   
     fk06330   241    HRCQFnGCRKVYTKSSHLKAHQRTH    265  

PF00096.16.ls: domain 1 of 3, from 241 to 265: score 29.8, E = 8.8e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C+f++C k+++ +s+Lk+H+rtH   
     fk06330   241    HRCQFnGCRKVYTKSSHLKAHQRTH    265  

PF00096.16.fs: domain 2 of 3, from 271 to 295: score 31.8, E = 1.1e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ykC++++C  +F r+++L+rH r+H   
     fk06330   271    YKCSWeGCEWRFARSDELTRHYRKH    295  

PF00096.16.ls: domain 2 of 3, from 271 to 295: score 33.8, E = 5.5e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ykC++++C  +F r+++L+rH r+H   
     fk06330   271    YKCSWeGCEWRFARSDELTRHYRKH    295  

PF00096.16.fs: domain 3 of 3, from 301 to 323: score 27.8, E = 1.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C+++Fsr+++L  H+++H   
     fk06330   301    FKCN-HCDRCFSRSDHLALHMKRH    323  

PF00096.16.ls: domain 3 of 3, from 301 to 323: score 29.8, E = 8.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C+++Fsr+++L  H+++H   
     fk06330   301    FKCN-HCDRCFSRSDHLALHMKRH    323  

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