hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-12252451/chunk_1/iprscan-20090618-12252451.nocrc
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Query sequence: fk06330
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  80.8    1.7e-19   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     241   265 ..     1    23 []    22.9    0.043
SM00355      2/3     271   295 ..     1    23 []    32.5  5.9e-05
SM00355      3/3     301   323 ..     1    23 []    25.4    0.008

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 241 to 265: score 22.9, E = 0.043
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++C+++gC k+++  ++Lk H+r+H   
     fk06330   241    HRCQFnGCRKVYTKSsHLKAHQRTH    265  

SM00355: domain 2 of 3, from 271 to 295: score 32.5, E = 5.9e-05
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ykC+++gC ++f + ++L+rH+r+H   
     fk06330   271    YKCSWeGCEWRFARSdELTRHYRKH    295  

SM00355: domain 3 of 3, from 301 to 323: score 25.4, E = 0.008
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+++fs+ ++L  Hm++H   
     fk06330   301    FKCNH-CDRCFSRSdHLALHMKRH    323  

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