hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-04035377/chunk_1/iprscan-20080811-04035377.nocrc
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Query sequence: fk06353
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01603.10.fs Protein phosphatase 2A regulatory B subunit    564.9   7.4e-167   1
PF01603.10.ls Protein phosphatase 2A regulatory B subunit    362.7   5.4e-106   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01603.10.fs   1/1      88   303 ..     1   219 [.   564.9 7.4e-167
PF01603.10.ls   1/1      88   359 ..     1   412 []   362.7 5.4e-106

Alignments of top-scoring domains:
PF01603.10.fs: domain 1 of 1, from 88 to 303: score 564.9, E = 7.4e-167
                   *->pLPsfkDvpasEkeeLfikKLeqCcvvFDFtDPlkdlkeKEiKRqtL
                      pLP++kDvpasE +eL+ +KL qC v+FDF D+++dlk+KE+KR++L
     fk06353    88    PLPLLKDVPASELHELLSRKLAQCGVMFDFLDCVADLKGKEVKRAAL 134  

                   lELvDyvtssrgkltEavypeivkMvsvNlFRtLpPssnenkeefDpeED
                   +ELv++v s+rg+l E+vyp+i++M+svN+FRtLpPs+n+   efDpeED
     fk06353   135 NELVECVGSTRGVLIEPVYPDIIRMISVNIFRTLPPSENP---EFDPEED 181  

                   EPtLEpAWPHLQlVYELFLRFleSPdfdakvAKrYiDqkFvlrLLdLFDS
                   EP LEp+WPHLQlVYE+FLRFleSPdf+++vAKrY+DqkFvl+LL+LFDS
     fk06353   182 EPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDS 231  

                   EDPRERdfLKTiLHRIYGKFLvlRaFIRKqiNNIFyrFiYEtEkhnGIAE
                   EDPRER++LKTiLHR+YGKFL+lRa+IRKq+N+IF+rFiYE E++nG+AE
     fk06353   232 EDPREREYLKTILHRVYGKFLGLRAYIRKQCNHIFLRFIYEFEHFNGVAE 281  

                   LLEILGSIINGFALPLKeEHKi<-*
                   LLEILGSIINGFALPLK EHK+   
     fk06353   282 LLEILGSIINGFALPLKTEHKL    303  

PF01603.10.ls: domain 1 of 1, from 88 to 359: score 362.7, E = 5.4e-106
                   *->pLPsfkDvpasEkeeLfikKLeqCcvvFDFtDPlkdlkeKEiKRqtL
                      pLP++kDvpasE +eL+ +KL qC v+FDF D+++dlk+KE+KR++L
     fk06353    88    PLPLLKDVPASELHELLSRKLAQCGVMFDFLDCVADLKGKEVKRAAL 134  

                   lELvDyvtssrgkltEavypeivkMvsvNlFRtLpPssnenkeefDpeED
                   +ELv++v s+rg+l E+vyp+i++M+svN+FRtLpPs+n+   efDpeED
     fk06353   135 NELVECVGSTRGVLIEPVYPDIIRMISVNIFRTLPPSENP---EFDPEED 181  

                   EPtLEpAWPHLQlVYELFLRFleSPdfdakvAKrYiDqkFvlrLLdLFDS
                   EP LEp+WPHLQlVYE+FLRFleSPdf+++vAKrY+DqkFvl+LL+LFDS
     fk06353   182 EPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDS 231  

                   EDPRERdfLKTiLHRIYGKFLvlRaFIRKqiNNIFyrFiYEtEkhnGIAE
                   EDPRER++LKTiLHR+YGKFL+lRa+IRKq+N+IF+rFiYE E++nG+AE
     fk06353   232 EDPREREYLKTILHRVYGKFLGLRAYIRKQCNHIFLRFIYEFEHFNGVAE 281  

                   LLEILGSIINGFALPLKeEHKiFLvRVLiPLHkpKslslYHqQLaYCiVQ
                   LLEILGSIINGFALPLK EHK+  +R                        
     fk06353   282 LLEILGSIINGFALPLKTEHKLPGSRP----------------------- 308  

                   FvEKDpkLtetVIrGLLKyWPktnSqKEVmFLgElEEILeviePaEFqKi
                       Dp                                            
     fk06353   309 ----DP-------------------------------------------- 310  

                   mvPLFrQIArCvsSsHFQVAERALylWNNeyivsLIeqNrkvILPIiFPa
                     P  +Q+A C+  +                         + IL   +P 
     fk06353   311 --PALCQVAVCLPCP-------------------------AGILCGAVPG 333  

                   LernskeHWNqtihsLvyNVlKlFmEmdqkLFdectakYkedrakekeke
                                                   ++c++    dra+   ++
     fk06353   334 --------------------------------EGCHS----DRARDPGAA 347  

                   ekReelWkkLEelas<-*
                   ++     k+L+       
     fk06353   348 QILA---KNLHPEGG    359  

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