hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080811/iprscan-20080811-04092834/chunk_1/iprscan-20080811-04092834.nocrc
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Query sequence: fk06411
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 295.1    5.2e-84  12

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/12    216   238 ..     1    23 []    24.8    0.012
SM00355      2/12    244   266 ..     1    23 []    27.1   0.0024
SM00355      3/12    298   320 ..     1    23 []    26.0   0.0052
SM00355      4/12    326   348 ..     1    23 []    21.8    0.098
SM00355      5/12    354   376 ..     1    23 []    30.3  0.00027
SM00355      6/12    382   404 ..     1    23 []    24.7    0.013
SM00355      7/12    413   435 ..     1    23 []    26.6   0.0034
SM00355      8/12    441   463 ..     1    23 []    21.9    0.092
SM00355      9/12    469   493 ..     1    23 []    26.6   0.0035
SM00355     10/12    505   527 ..     1    23 []    23.8    0.024
SM00355     11/12    533   555 ..     1    23 []    16.6      3.6
SM00355     12/12    561   584 ..     1    23 []    24.9    0.011

Alignments of top-scoring domains:
SM00355: domain 1 of 12, from 216 to 238: score 24.8, E = 0.012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC + Cg++f ++ aL+ H  +H   
     fk06411   216    HKCGE-CGMVFQRRyALIMHKLKH    238  

SM00355: domain 2 of 12, from 244 to 266: score 27.1, E = 0.0024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykCp+ C+k+f    +L+ H+ +H   
     fk06411   244    YKCPL-CKKQFQYSaSLRAHLIRH    266  

SM00355: domain 3 of 12, from 298 to 320: score 26.0, E = 0.0052
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+i Cg++ +   +L+ Hm +H   
     fk06411   298    FICSI-CGRTLPKLySLRIHMLKH    320  

SM00355: domain 4 of 12, from 326 to 348: score 21.8, E = 0.098
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk+f  k+ Lk H+  H   
     fk06411   326    HACQV-CGKTFIYKhGLKLHQSLH    348  

SM00355: domain 5 of 12, from 354 to 376: score 30.3, E = 0.00027
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C ksf +k++L++Hm +H   
     fk06411   354    FQCEL-CVKSFVTKrSLQEHMSIH    376  

SM00355: domain 6 of 12, from 382 to 404: score 24.7, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgksf++ + L +H ++H   
     fk06411   382    YLCSV-CGKSFHRGsGLSKHFKKH    404  

SM00355: domain 7 of 12, from 413 to 435: score 26.6, E = 0.0034
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C ksf  +++L++Hm +H   
     fk06411   413    YHCTQ-CEKSFFEArDLRQHMNKH    435  

SM00355: domain 8 of 12, from 441 to 463: score 21.9, E = 0.092
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C+k++s+k++   H+++H   
     fk06411   441    FQCQF-CDKCYSWKkDWYSHVKSH    463  

SM00355: domain 9 of 12, from 469 to 493: score 26.6, E = 0.0035
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      y+C+i Cgk f  k  ++rH+++ +H   
     fk06411   469    YRCNI-CGKEFYEKaLFRRHVKkaTH    493  

SM00355: domain 10 of 12, from 505 to 527: score 23.8, E = 0.024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C++ Cg++f++ ++++rHm  H   
     fk06411   505    RVCEK-CGRKFTQLrEYRRHMNNH    527  

SM00355: domain 11 of 12, from 533 to 555: score 16.6, E = 3.6
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C   Cg    ++++LkrH+r+H   
     fk06411   533    FECLT-CGVAWADArSLKRHVRTH    555  

SM00355: domain 12 of 12, from 561 to 584: score 24.9, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+Cp+ C++ + +++ L++Hm + H   
     fk06411   561    YVCPV-CSEAYIDArTLRKHMTkFH    584  

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